Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1911 ATGTATATGACAGATACTTACTCGATCAAGAGTTACGAGAAGTACTTCCGTGACTCACAAACGGAAGAACTCATAGAACTGTCTAGCTCCGACATTTCTACAAGTTCAATTCATCCAGATGGTGCTTCAGTGGTTGCTAATAACCCCTTTGATAGTTGTTTGATGATGGAAAATCGAAGCGGGGATTCAGTTGAAGTGGACCGTGTAATGAGATCGAAACTAGAAGCATTGGAGAGAGCATTACTTGAGGATAGTGACATTGAGGCGGAAGAGGAATATGAAAACTCTCGATGCTTGGAAATCGATTGGGCGGATCATGATCCGGTTCAGAATATGCTGCTTCTCGATGAACATGACTCGCCAAAGGAGTATTCGTCTTCAGATTCCAACGTTACTAGCATTGGTAGCATTGCTAAAGAAATACGAAAAATCTCTAGGAACCCCAAGCAACTGCTATATGAATGTGCTACTGCAATTTCAGAAGGAAATGACAAGGAAGCATCATCGATGATAAACAATCTTCGACAGATGGTGTCGATTCAAGGAGAGCCTTCTCAAAGAATTGCAGCCTATATGGTGGAGGGACTTGCAGCTCGTCTCGCTGAATCGGGTAAAAGTATATATAGAGCCTTGAAATGCAAGGAACCTCCTTCTTCGGACCGATTAGCCGCGATGCAGATACTCTTTGAGATTTGTCCGTGCTTTAAATTCGGGTTTATTGCTGCAAACAATGCGATTACAGAAGCTGTTAAAGATGAAATGAAGATTCATATCATAGATTTCGACATCAATCAAGGAAGTCAGTACATAAACCTTATTCAAACACTTGCTTTGAGATCTCGTAAGCCATCACATGTTCGATTAACCGGGATCGATGATCCTGAATCCGTGCAACGATCTGTTGGAGGACTAAATATCATAGGACAAAGGCTCAAAAAACTAGCAGAAGCACTTGGTTTGTCATTTGAATTTCGAGCAGTCGCATCAAAGGCATCCATTGTCACCTCGTCGATGCTCAACTGTCATCGTGGAGAAGCTCTTGTCGTGAACTTTGCATTCCAGCTTCATCACATGCCTGACGAGAGCGTGTCAACGGTAAACGAACGAGACCAACTTCTTCGCTTGGTGAAGAGCTTGAATCCCAAGATTGTAACGGTGGTGGAGCAAGACGTAAACACCAATACCGCGCCTTTCTTGCAGAGGTTCGTCGAAGCTTATAATTACTACTCTGCTGTTTTTGAGTCACTTGATGTTACTCTTCCTAGAGAGAGTCAAGATAGGATGAATGTTGAGAGGCAATGCTTAGCTAGAGACATTGTTAATACGGTTGCGTGTGAAGGCGAGGATCGGATAGAACGGTATGAAGTCGCGGGGAAATGGAGAGCTAGGATGACAATGGCGGGGTTTAGTTCATCTCCGATGAGCACAAACGCGAGCGACGAAATCCGAAAACTAGTTAAGGTGTACTGTGATAGGTACAAGATAAAGGAGGAAAAGGGTGCACTTCATTTTGGTTGGGAAGACAAAAACTTGATTGTGGCTTCTGCATGGAGATGA 1557 0.4342 MYMTDTYSIKSYEKYFRDSQTEELIELSSSDISTSSIHPDGASVVANNPFDSCLMMENRSGDSVEVDRVMRSKLEALERALLEDSDIEAEEEYENSRCLEIDWADHDPVQNMLLLDEHDSPKEYSSSDSNVTSIGSIAKEIRKISRNPKQLLYECATAISEGNDKEASSMINNLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYRALKCKEPPSSDRLAAMQILFEICPCFKFGFIAANNAITEAVKDEMKIHIIDFDINQGSQYINLIQTLALRSRKPSHVRLTGIDDPESVQRSVGGLNIIGQRLKKLAEALGLSFEFRAVASKASIVTSSMLNCHRGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKIVTVVEQDVNTNTAPFLQRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNTVACEGEDRIERYEVAGKWRARMTMAGFSSSPMSTNASDEIRKLVKVYCDRYKIKEEKGALHFGWEDKNLIVASAWR* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1911 518 Pfam GRAS domain family 149 518 IPR005202 -
Psa5g1911 518 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 61 517 IPR030011 GO:0003700|GO:0005634
Psa5g1911 518 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 61 517 IPR005202 -
Psa5g1911 518 ProSiteProfiles GRAS family profile. 139 518 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1911 Psa-Chr5 147247881 147250760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1911 5 518 GRAS Transcription Factor Family AT1G21450 60.221 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa5g1911 GRAS 1.3e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1911 - - cam:101513397 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1911 5 147247881 147250760 Psa5g1911 5 147247881 147250760 ECH
Psa6g0913 6 34420285 34423978 Psa5g1911 5 147247881 147250760 PCT