Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1908 ATGGTACCTCCGGGTCCAGGCCCATCAACCCCCATTGGTGGTGGTCCTCAGTCTCTCTCACCTTCACTAATGAGAACAAATTCAGGAATGTTGGGGGCTCAAGGGGCTCCCATGTCTTTGCAGACGTCTTTCCCTTCGCTTGTGTCTCCTCGTACTCAGTTTGGCAACATGAATATTCTAGGAAATATGTCCAATATGACTTCTATGCTGAATCAATCTTTCTCAAATGGAGTTCCAAATCACGGGCTCACGGGTCAAGGAAGTAGCCAACGTGGAGGGATTGAAAATGGAGGCGAAGCAGGCCAACTTTCCAGTGTTGGCAATGGAACGAGCTTCACTGGTTCTCCATCCTCATACGGACAAGCGAATATGGGGAATGCCGGTTCCTCTGGTCAAGTTCAGGGTCAACAATTTTCCAACCCTTCTAACAACCAACTGTTGTCAGATCATCAGCATTCTCAACATCTTGATCCTCAAAATTTCCAACACAGCCAGCAGTCAATGCAACAGTTCTCTTCTCTGAATACACAGCAGCAACAGCATTATCAATCAATGCGAGGAGGAATAGGTGGAATGGGACCAGTGAAGTTAGAGCCCCAGGTAAACAATGACCAACTTGGACAGCAACAGCTGCAGTCAATGAGGAATCTTCCTCCAGTGAAATTGGAACAACAACAAATTCAAACAATGAGAACTTTGGCACCAGTTAAAATGGAGCCCCAGCATTGTGATCAACCGCTATTTTTGCAGCAACAACAACAGCAACAACAGTTCCTCCACATGTCGAGACAATCTTCTCAGGCTGCTGCTGCTCAGATCAATCTTTTGAACCATCACAGGCTTTTACAGTTTCAACACCAGCAGCAACAACTTTTAAAGTCAATGCCTCAACAACGGTCTCAATCACCACAACAATTTCAACAGCAGAATATGCCTGCGAGGTCTCCTGTGAAACCGGCATATGAACCAGGGATGTGTGCAAGGCGGCTGACACACTACATGTATCAGCAACAACATAGACCAGAGGATAACAACATCGAGTTTTGGAGGAAGTTTGTTGCTGAGTATTTTGCTCCTAATGCCAAGAAGAAGTGGTGTGTCTCTATGTATGGAAGTAGCAGACAAACAACTGGAGTTTTCCCTCAGGATGTATGGCACTGCGAAATATGTAATCGCAAACCTGGCCGTGGGTTTGAAGCAACTGTTGAGGTTCTTCCCAGGCTTTTCAAGATAAAGTATGAAAGTGGCACTCTGGAAGAGCTACTTTATGTTGACATGCCCCGTGAATATCATAATTCCTCTGGCCAGATTGTTCTAGACTATGCAAAAGCAATACAAGAAAGTGTTTTTGAGCAACTCCGTGTTGTTCGTGATGGTCAACTTCGAATAGTTTTCTCTCCAGAATTGAAGATATGCTCTTGGGAATTTTGTGCTCGGCGCCATGAAGAGCTCATCCCAAGAAGACTGTTAATACCCCAGATTAGTCAGATTGGAGCGGTTGCCCAGAAATACCAGGCTTTAACTCAAAATGCAACACCCAGTATTTCTGCTCCAGAGTTACAAAATAATTGCAATATGTTTGTTGCGTCAGCTCGTCAATTGGCTAAAGCCCTAGAAGTTCCATTAGTTAATGATTTAGGATATACAAAGACATATGTGCGCTGCCTACAGATATCAGAAGTGGTAAATAGCCTGAAAGACTTGATAGATTACAGTAGAGAAACGGTGACCGGACCCATGGAGAGCTTGGCCAAGTTCCCTCGGAGAACAGTTAATTCATGCGGAGTTCGTAATCAAGCGCAGCAGCATGAAGATCAATTAAAACTACAGCAGCAGCAACAGCAAATGATGGTGCATAACTCAAATGGAGATCAAAATCCAGTGCAAGCTGCTGCCATGCAAATTGCATCCAGCAACGGTATGGTTAGTGTAAACAGTTCTGTCAACTCAGCGTCTGCATCAACAACCACAAGCACTATTGTTGGACTTCTCCACCAAAACTCTGTGAATTCTAGACAAAATACAATGAACAATGCAAGCAGTCCGTATGGAGGTTGTTCTGTTCAGATTCCATCTCCAGGTTCCTCCAGTACTGTTCCACAGACCCAGCCAAACTCATCCCCTTTTCAGTCACCGGCGACACCATCCTCATCTAATAACCCCCCACAAACACCTCGTTCTACTTTAACGCCTCCCAATCAAATGAATACAACAAATCCAACAGCTAATATTCCACTCCAACAACATCAATATCAATCATCTCTTTCTGGTGATGCTGACCCAAGTGATGCTCAAAGTTCAGTCCAGAAAATCATACAGGAGATGATGATGTCCTCGCAGATGAATGGTACTGGAGGAATGCCAGGTTCTGGTTCTCTAGGAAATGACTTGAAGAATGTAAGCAATATTCTGCCAATGAGTGCGAATACAGGGCTCAATAATGGTAACGGCGCAGTGAACAATAATCCAGGTGCCGGTAGTTATGGAACAATGGGGTTCAGTCAATCCACTATGCCTAATGGAATGAGAGCTGCTATGGTTAATAATTCAATCATGAATGGAAGGGGAGGAATGGCATCCGTTGCACGGGATCAAGCTATGAATCATCATCAACAGGATCTGTCAAACCAATTGCTAAGTGGTCTAGAAGCAGCGAATGGTTTTAATAATCTTCAATTTGATTGA 2685 0.4425 MVPPGPGPSTPIGGGPQSLSPSLMRTNSGMLGAQGAPMSLQTSFPSLVSPRTQFGNMNILGNMSNMTSMLNQSFSNGVPNHGLTGQGSSQRGGIENGGEAGQLSSVGNGTSFTGSPSSYGQANMGNAGSSGQVQGQQFSNPSNNQLLSDHQHSQHLDPQNFQHSQQSMQQFSSLNTQQQQHYQSMRGGIGGMGPVKLEPQVNNDQLGQQQLQSMRNLPPVKLEQQQIQTMRTLAPVKMEPQHCDQPLFLQQQQQQQQFLHMSRQSSQAAAAQINLLNHHRLLQFQHQQQQLLKSMPQQRSQSPQQFQQQNMPARSPVKPAYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSSRQTTGVFPQDVWHCEICNRKPGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPELKICSWEFCARRHEELIPRRLLIPQISQIGAVAQKYQALTQNATPSISAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKTYVRCLQISEVVNSLKDLIDYSRETVTGPMESLAKFPRRTVNSCGVRNQAQQHEDQLKLQQQQQQMMVHNSNGDQNPVQAAAMQIASSNGMVSVNSSVNSASASTTTSTIVGLLHQNSVNSRQNTMNNASSPYGGCSVQIPSPGSSSTVPQTQPNSSPFQSPATPSSSNNPPQTPRSTLTPPNQMNTTNPTANIPLQQHQYQSSLSGDADPSDAQSSVQKIIQEMMMSSQMNGTGGMPGSGSLGNDLKNVSNILPMSANTGLNNGNGAVNNNPGAGSYGTMGFSQSTMPNGMRAAMVNNSIMNGRGGMASVARDQAMNHHQQDLSNQLLSGLEAANGFNNLQFD* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1908 894 MobiDBLite consensus disorder prediction 287 314 - -
Psa5g1908 894 MobiDBLite consensus disorder prediction 692 727 - -
Psa5g1908 894 Pfam LIM-domain binding protein 329 583 IPR029005 -
Psa5g1908 894 MobiDBLite consensus disorder prediction 149 183 - -
Psa5g1908 894 PANTHER LIM DOMAIN-BINDING PROTEIN 1 894 IPR029005 -
Psa5g1908 894 MobiDBLite consensus disorder prediction 287 316 - -
Psa5g1908 894 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1908 Psa-Chr5 147190055 147197983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1908 8 894 C2H2 Transcription Factor Family AT1G43850 56.757 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1908 - - gmx:100799771 1256.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1908 5 147190055 147197983 Psa5g1908 5 147190055 147197983 ECH