Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa5g1906 | ATGTCGAACACAGTTGGTCAGATCATCAAGTGCAGAGCTGCGGTTGCATGGGAGGCTGGGAAGCCGTTGGTGATTGAAGAAGTAGAGGTGGCGCCACCGCAGGCAGGTGAAGTTCGTCTCAAGATACTCTTCACCTCCCTTTGCCACACTGATGTTTACTTCTGGGAAGCTAAGGGTCAGACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGTGTAGGTGAGGGTGTGACACATCTTAAACCAGGGGATCATGCTCTGCCGGTATTCACGGGGGAATGTGGGGAATGTCCACATTGTAAGTCAGAGGAAAGCAACATGTGTGATCTTCTTAGGATCAACACAGATAGAGGTGTAATGCTCAATGACAACAAGTCCAGATTCTCTATTAAGGGACAACCTGTACACCATTTCGTCGGCACCTCCACGTTCAGCGAATACACTGTGGTTCATGCTGGTTGTGTTGCAAAGATCAATCCTGATGCACCGCTTGACAAAGTTTGTATTCTCAGCTGTGGAATATGCACTGGTCTTGGTGCTACCATCAATGTTGCAAAACCAAAACCTGGCTCTTCTGTTGCTATCTTTGGACTTGGAGCTGTTGGTCTTGCTGCTGCTGAAGGGGCAAGAATTTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGGGTAAATGAGTTCGTAAACCCAAAAGAGCACGACAAACCTGTGCAACAGGCCATGATCTCAGCATTCGAATGTGTTCATGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAGCAAAGATGATGCCTTCAAAACTCATCCTATGAATTTCTTGAATGAGAGGACGCTTAAGGGTACCTTCTATGGCAACTACAAGCCCCGCACTGATCTTCCCAATGTTGTTGAGAAGTACATGAAGGGGGAGCTGGAGCTGGAGAAATTCATAACTCACACAGTACCATTCTCAGAGATTAACAAAGCTTTTGATTACATGTTGAAAGGGGAGTCCATCAGATGTATCATCAAAATGGAGGAGTAA | 1080 | 0.4593 | MSNTVGQIIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKEHDKPVQQAMISAFECVHDGWGVAVLVGVPSKDDAFKTHPMNFLNERTLKGTFYGNYKPRTDLPNVVEKYMKGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIKMEE* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa5g1906 | 359 | SUPERFAMILY | GroES-like | 4 | 186 | IPR011032 | - | |
| Psa5g1906 | 359 | CDD | alcohol_DH_plants | 9 | 355 | - | - | |
| Psa5g1906 | 359 | PANTHER | ALCOHOL DEHYDROGENASE-RELATED | 4 | 257 | - | - | |
| Psa5g1906 | 359 | PANTHER | ALCOHOL DEHYDROGENASE-RELATED | 256 | 357 | - | - | |
| Psa5g1906 | 359 | Pfam | Zinc-binding dehydrogenase | 206 | 256 | IPR013149 | - | |
| Psa5g1906 | 359 | Pfam | Alcohol dehydrogenase GroES-like domain | 36 | 163 | IPR013154 | - | |
| Psa5g1906 | 359 | PANTHER | ALCOHOL DEHYDROGENASE | 4 | 257 | - | - | |
| Psa5g1906 | 359 | PANTHER | ALCOHOL DEHYDROGENASE | 256 | 357 | - | - | |
| Psa5g1906 | 359 | Gene3D | - | 183 | 300 | - | - | |
| Psa5g1906 | 359 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 169 | 322 | IPR036291 | - | |
| Psa5g1906 | 359 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 69 | 83 | IPR002328 | GO:0008270|GO:0016491 | |
| Psa5g1906 | 359 | Gene3D | - | 19 | 349 | - | - | |
| Psa5g1906 | 359 | SUPERFAMILY | GroES-like | 307 | 355 | IPR011032 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa5g1906 | Psa-Chr5 | 146823629 | 146825734 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa5g1906 | 37 | 349 | Monolignol Biosynthesis Gene Families | AT1G72680 | 25.000 | 2.89e-14 | 71.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa5g1906 | K18857 | - | gmx:100801918 | 681.789 |