Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1898 ATGGCGAGACTCGAGATGTCTTCGGTTCAAAGCTCATTCACCATTTCTGCAGAAAATCAGTATCTCGAAGAGCAGCGTATAATCATTCGAGTTGATTCACAACAACATGAAAATATCAATACTCGTATTGGTACCAATCTCATGCAACTGTTTATGACTTGTATGGACGAGCTTAAGCATAATAATTCAAACATTGCCAAGATGCTTTTAGAGAAGGTGAAAGGTAATTATAAATTGGTGGCAACTGATCACAACTTCATAGTTGATGCCATTGCAGTTGAAACAATCAATCATCTTCACAAAGCGGTTAAATCAATGGTGGAGGCTGGGTTTGAGAAAGCGTGTTCCGAGTTATATGTTAATATGCGTAAAGAATGGTTGGAAAGTTTATTAATAAATAAATTATTAGGATTGGAAAAGATGGGATTTCAAGATTATATGATTGGAAGATGGATTAAAGTTTTCAAGGTTGCTCTTAGAATACTATTTCCTAGTGAGCGACGACTCTATGATCTTGTCTTCTCGGAATCCACTTCTATATCATCTGATATCTGTTTCACTAAGGTTTGTCATGGATCAACGATAGAACTGTTGAATTTTGCTGATTTGTTTGCGAATAGAATCACCTCAGCGTGGCGTTTGTTTAAAATTCTTGACTTGTTTGAGACTATAGATGATTTGATTCCCGAATTTGAATCATTGTTTACTGTTTCATTGGTGAACAAAGCAATAAAAATAAAGAACAAATTGGGTGAAATAAGTAGAGACATCTTCATGGAGTTTGAGAATCTGATATTTGTTAGTCCGGTTGGGGAGTTAGACTGTTGGGTTGATGGTTGTGTTCATCCAATGACCTGCGAGGCCGCTGGAAACATACTTTTGGCTTTCTGGTCAAGACAGAACCTGGAGAAAGTTTTACGAGAATACTCCGTGGTTGTGGCCGATGGAGCAGGAAAATCTTTGTTCCATTCGCGGATGGAACTGATAATGGAGCAGTTCGAGAGAAACTTGGAAGCTAAGTCGCAGATTTATGAGGACCTTGCTTTGCGTTATTTTTTCATGATGAATAATATAAGTCAGATTGAGTACTTATTGGAAACCTTTTGGGATGATGGATTTTGCAAAAACACGAGGCAATACTTGGAACTCTATTGTAAAAACTCATGGGAAAAGGTGATAGACTTATTGAAGATGGATATCGATGAGTCAGTGGCGCCCGATTCTAAAGCAGATTTAACTAAAGATAAGCTCAATTTGTTCAATCAGAAATTCAAGGAGATGTGCAGAATTCAGTCCAAATGGCGCGTTTTTAACAAGCAGTTAAAGAAGCAAATAATAATTTATGTGGAAAACATGTTGATGCCGGCTTATGAAAACTTGATTGCAAAGTTTGAGAATGGTTTTGCTAAAAATGCCGACGAGTATACAATGTATGGGGTGTCTGACATTCAAGATCAACTCAATAATTTATTTCTGTCACAGGATGTTGAGTTTGTTAGAGGACCGGTTGGTAATCAATTAGTTAGTTACTAA 1533 0.3705 MARLEMSSVQSSFTISAENQYLEEQRIIIRVDSQQHENINTRIGTNLMQLFMTCMDELKHNNSNIAKMLLEKVKGNYKLVATDHNFIVDAIAVETINHLHKAVKSMVEAGFEKACSELYVNMRKEWLESLLINKLLGLEKMGFQDYMIGRWIKVFKVALRILFPSERRLYDLVFSESTSISSDICFTKVCHGSTIELLNFADLFANRITSAWRLFKILDLFETIDDLIPEFESLFTVSLVNKAIKIKNKLGEISRDIFMEFENLIFVSPVGELDCWVDGCVHPMTCEAAGNILLAFWSRQNLEKVLREYSVVVADGAGKSLFHSRMELIMEQFERNLEAKSQIYEDLALRYFFMMNNISQIEYLLETFWDDGFCKNTRQYLELYCKNSWEKVIDLLKMDIDESVAPDSKADLTKDKLNLFNQKFKEMCRIQSKWRVFNKQLKKQIIIYVENMLMPAYENLIAKFENGFAKNADEYTMYGVSDIQDQLNNLFLSQDVEFVRGPVGNQLVSY* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1898 510 SUPERFAMILY Cullin repeat-like 51 491 IPR016159 -
Psa5g1898 510 Pfam Exo70 exocyst complex subunit 150 488 IPR046364 GO:0000145|GO:0005546|GO:0006887
Psa5g1898 510 Gene3D Exocyst complex component Exo70 20 497 - -
Psa5g1898 510 Coils Coil 330 350 - -
Psa5g1898 510 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 38 491 - -
Psa5g1898 510 PANTHER EXOCYST COMPLEX PROTEIN EXO70 38 491 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1898 Psa-Chr5 146522476 146525425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1898 82 491 EXO70 exocyst subunit family AT5G58430 42.069 4.77e-94 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1898 K07195 - lja:Lj2g3v2364680.2 480.715