Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1896 ATGGGAAAGTGGTGGTTTGTTGGTGTATTGATTGCTCTGGGTTATGTATGCTTATTGGGCACTACTTTTAGGGTAGAAGGATACCCTATTGAAGATTTGGTTGAGAGGTTACCAGGGCAACCCAAGGTTAAATTTAGTCAATATGCTGGCTATGTTGATATTGATCTCAAACATGGGAGGAGTCTCTTCTACTATTTTGTTGAGGCTGATCATCACCCTCACAAAAAGCCTCTCACCCTTTGGCTCAATGGAGGTCCGGGATGTTCTTCCATTGGAGGAGGTGCTTTTACTGAATTAGGACCATTTTATCCTAAGGTTAATGGACGTGGTTTAAGAAGGAATTCAAAGTCTTGGAATAAAGTTTCAAATCTTCTGTTTGTGGAATCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACATCTTCTGATTATACCATTGGTGATGATGCTACAGCCAATGACATGGTTTTGTTCTTGCTGAAATGGTACGAGAAATTCCCTTCCTATAAATCCAGAAAATTGTTTCTGACTGGAGAAAGCTATGCAGGACATTACATACCCCAGCTAGCTAATGCTATTCTTGATTATAATGTTCATCATTCATCTGGTTTCAAATTCAATATAAAAGGACTCGCGATTGGAAATCCACTTCTGAAATTGGATCGTGATGCACAAGCAACATATGAATATTTTTGGTCACACGGAATGATTTCTGATGAAATTAGTCTTGCTCTTACGCATGATTGTGATTTTGATGATTATATTTACGCAAATCCTCATAATTTATCCAAATCATGCAATAAGGCTATAAATGACGCTAATAAAATTGTGGGCGAGTATATAAACAACTATGATGTGATTCTTGATGTTTGTTATCCATCCATAGTTCAACAAGAACTCAAAATGAAAAAGATGGCTACTAAAATAAGTTTAAGTGTAGATGTTTGTATGGGCTATGAAAATGATATTTACCTTAATCTCCCAGAAGTTCAAAAGGCTCTTCATGCTAACCGTACAAATTTGCCATATTCATGGTCCATGTGTAGTGATGTTTTAAATTATAGTCTATCTGATCCTAATATTGACATGCTTCCGAGTTTGAAACGGATAGTTCAAAACCATATTCCAATATGGATTTACAGTGGAGACCAAGATTCAGTGGTACCATTACTAGGTAGTCGCACACTAATTCGTGAACTAGCTGATGACCTAAAATTCAAGATTACTGATCCATATAGGGTTTGGTTTCACAATAGACAGGTTGGAGGTTGGGTAACTGAGTATGGAGAATTGTTAACATTTGCGACTGTAAGAGGAGCTGGACACATGGTACCATATGCACAACCTTCAAGAGCATTGCATCTTTTTCAATCCTTTATAAGTGGCAGGAGATTGCCAAACACTACTAGACCTTCAATTGATGAATGA 1428 0.3746 MGKWWFVGVLIALGYVCLLGTTFRVEGYPIEDLVERLPGQPKVKFSQYAGYVDIDLKHGRSLFYYFVEADHHPHKKPLTLWLNGGPGCSSIGGGAFTELGPFYPKVNGRGLRRNSKSWNKVSNLLFVESPAGVGWSYSNTSSDYTIGDDATANDMVLFLLKWYEKFPSYKSRKLFLTGESYAGHYIPQLANAILDYNVHHSSGFKFNIKGLAIGNPLLKLDRDAQATYEYFWSHGMISDEISLALTHDCDFDDYIYANPHNLSKSCNKAINDANKIVGEYINNYDVILDVCYPSIVQQELKMKKMATKISLSVDVCMGYENDIYLNLPEVQKALHANRTNLPYSWSMCSDVLNYSLSDPNIDMLPSLKRIVQNHIPIWIYSGDQDSVVPLLGSRTLIRELADDLKFKITDPYRVWFHNRQVGGWVTEYGELLTFATVRGAGHMVPYAQPSRALHLFQSFISGRRLPNTTRPSIDE* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1896 475 ProSitePatterns Serine carboxypeptidases, histidine active site. 432 449 IPR033124 GO:0004185
Psa5g1896 475 PANTHER CARBOXYPEPTIDASE 6 469 - -
Psa5g1896 475 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 469 IPR001563 GO:0004185|GO:0006508
Psa5g1896 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Psa5g1896 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Psa5g1896 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Psa5g1896 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185|GO:0006508
Psa5g1896 475 Gene3D - 363 462 - -
Psa5g1896 475 SUPERFAMILY alpha/beta-Hydrolases 32 465 IPR029058 -
Psa5g1896 475 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Psa5g1896 475 Pfam Serine carboxypeptidase 39 462 IPR001563 GO:0004185|GO:0006508
Psa5g1896 475 Gene3D alpha/beta hydrolase 30 292 IPR029058 -
Psa5g1896 475 Gene3D - 316 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1896 Psa-Chr5 146345052 146347688 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1896 324 465 Calmodulin-binding Proteins AT2G22960 31.034 6.58e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1896 K16297 - gmx:100803335 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1896 5 146345052 146347688 Psa5g1896 5 146345052 146347688 ECH