Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1885 ATGGTGTTCTGTGATCACTGTTTGAGAAACGTTCATGGAATGCGAATTGACGATAGTGTCTTATGTTGTGAGACCTGTGGGAAGGTGTTGGAAGATTACTATTTTTCTCAGGAGGCAACTTTTGTGAAAACTGCTGGCGGAAAGAGCCAATTATCAGGCAATTATGTAATGGGGGTTCGCATTGGAATCTCCGACTCACGTGCAAGGACTTTAGATAGAGCTAGAGATTTTATGAAAAATCTAAGTTGCGGCCTTGGAGTGGAAGATAATAGTATAGTTGAGGAAGCTTTGGCCTTTTATACAATAGCACTAGAGAAAAACTTTACAAAGGGACGTAAATCAGAACAAGTACAAGCTTCTTGCCTCTATCTTGCATACCGGGATAAAAATAAGCCATACCTTCTTATTGATTTTTCAAATTCTTTAAGGACAAATGTTTATGTGCTCGGCGCAGTTTTTTTGCAGCTTTGTAAAGTGTTAAGGCTTGAAAATCACCCGATTGTTCAAAAGCTTGTTGATCCCAGTCTTTTTATTTACAAATTTACAAATAATTTGTTAAAGCAAAGGAATGTGCCTGTCTCTGAAACTGCACTGAATATTATTGCCAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAGCCTAGCGGATTATGCGGTGCAGCATTATACATGTCTGCTCTTGCACATGGTTTTACATGCTCTAAGTCAGATATTCTAAGAATCGTCCATGTATGTGAAGCAACATTGACCAAGCGGCTGGTAGAGTTTGAGAATACAGAGTCCTCCAGTCTGACAATTGATGAGTTGAATGCAATGGCAAAAGAGCATGAAAAAGCTCCAATTAAAATACCAAATGGTGAATTGAAGAAATGTACTTCAGAGGATCAAGAACTACTGTGTCAACACAAGGGTAGTGGAATGCCCTATTTTGCACTTGGATTATGTGAAGCATGTTACAGGGAATTTGATACACTCTCTGGTGGACTTGATGGTGGTTTAGATCCTCCTGCATTCCAGCATGCTGAGAGGGTTAGAATGATAAAGTCACATTCTGAGGAGAATGCTAATAAATCAGATGATTTGGTAAAGGATTCAAATGGTGCATACGAGAGCCAAATAGAGTTACATGCTGCCTCTGAGCCTAAAAGTATTGGGGGTGATGAAGAATATATGGCCACTAAGGTCGTTGAGCATGATAAGTTACATGTAGAAGGTGATATGAATGCAAAAACTCAAGATGAATCAGAAAGTCTCTCTGACATTGATGATCAAGAGGTTGATGGCTACCTTCACAATGAGGAGGAAAAGCGTTACAAAAAAGAGATATGGGAATTTAATAATCGAGAGTATCTTGAGGAAATGAGGCAGAAACGAGCTCAAGAGGCAAAAAGTTTGGGTCCTGCTAAATCTGCTGTAGAGGCAATCGACCGACTGTTTAAAACAAAGAGACTCAGCTCCAGAGTCAATCATGATTCCTTGAAGAAATTATTTGATGAACCTGGAAGTCCACAGAATCACAAGAAAGTACGATTTGAGTCACCCTCAAACGATGGTGATAATTTGGAATTGAAGTCAGACCTTAAAACAAAGAAGGATGATTATGAATCGGCCGATGAATACGTGGAGGAGGATATGAATGGAGAATACAATGATACTTCGTATCCAGAAAATGATTATGATGAGACCACCAGGGGAACCAAAGATTGTCAAAAGTTTTGGTGTGTTGAGGTTCATTTAACAGGCGAGAATCATTGTTCTGTATTAGTTCATTCCAAAATTTTGTTCATTCATTATTTAGAGTGTGAGTTACAATTACCTCTCTTCATTCATGTATTGTCATTTAAACAAAACCAATTCCTCCTTGCAATAAAATCCGATCCCGATTCGACCGGCCAACACCACCCCGAATTTAACAGGGAGGCTGGTGTGGGAAGGGAATATTGA 1947 0.395 MVFCDHCLRNVHGMRIDDSVLCCETCGKVLEDYYFSQEATFVKTAGGKSQLSGNYVMGVRIGISDSRARTLDRARDFMKNLSCGLGVEDNSIVEEALAFYTIALEKNFTKGRKSEQVQASCLYLAYRDKNKPYLLIDFSNSLRTNVYVLGAVFLQLCKVLRLENHPIVQKLVDPSLFIYKFTNNLLKQRNVPVSETALNIIASMKRDWMQTGRKPSGLCGAALYMSALAHGFTCSKSDILRIVHVCEATLTKRLVEFENTESSSLTIDELNAMAKEHEKAPIKIPNGELKKCTSEDQELLCQHKGSGMPYFALGLCEACYREFDTLSGGLDGGLDPPAFQHAERVRMIKSHSEENANKSDDLVKDSNGAYESQIELHAASEPKSIGGDEEYMATKVVEHDKLHVEGDMNAKTQDESESLSDIDDQEVDGYLHNEEEKRYKKEIWEFNNREYLEEMRQKRAQEAKSLGPAKSAVEAIDRLFKTKRLSSRVNHDSLKKLFDEPGSPQNHKKVRFESPSNDGDNLELKSDLKTKKDDYESADEYVEEDMNGEYNDTSYPENDYDETTRGTKDCQKFWCVEVHLTGENHCSVLVHSKILFIHYLECELQLPLFIHVLSFKQNQFLLAIKSDPDSTGQHHPEFNREAGVGREY* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1885 648 Pfam Brf1-like TBP-binding domain 420 499 IPR011665 -
Psa5g1885 648 Gene3D Single helix bin 398 462 - -
Psa5g1885 648 SMART cyclin_7 176 259 IPR013763 -
Psa5g1885 648 SMART cyclin_7 76 158 IPR013763 -
Psa5g1885 648 SUPERFAMILY Cyclin-like 171 262 IPR036915 -
Psa5g1885 648 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Psa5g1885 648 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Psa5g1885 648 CDD CYCLIN 193 248 IPR013763 -
Psa5g1885 648 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 502 IPR029529 GO:0000126|GO:0000995|GO:0006383
Psa5g1885 648 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Psa5g1885 648 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Psa5g1885 648 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Psa5g1885 648 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 502 IPR000812 GO:0006352|GO:0070897
Psa5g1885 648 Gene3D - 62 165 - -
Psa5g1885 648 SUPERFAMILY Cyclin-like 73 164 IPR036915 -
Psa5g1885 648 MobiDBLite consensus disorder prediction 494 529 - -
Psa5g1885 648 Gene3D - 173 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1885 Psa-Chr5 145175540 145195926 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1885 1 483 Inorganic Solute Cotransporters AT2G01280 40.038 4.28e-102 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1885 K15196 - gmx:100817609 604.364