Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1872 ATGGAACATCATCATCAACAACAACAACTACCTAGTAAGAGTATCCTATGCAAATACACAGAACATCACACTGTTACAAAAAAAGTCATCACAACCAAGAAAACCGCTAACAGTAACAAAACAAACTCAACTATATACCCAAGAGTCGTACAAATATCCGTCACCGACCCTGACGCCACCGACTCATCCAGCGACGAAGAAGAAACTTTCTCCAGAAAAAGAACAAAGCGTTATATCCACCGTGTTGAAATCGAAGCCGCCGCTAAAGCCGTCGTCAACAGAAAAAGACCTGCCGGAGAAACATCGACTGTTAAAAGGCCGGTGAAAGTTCCTGCTATCACCAGTGGTAGAAAGTTCCGTGGTGTACGGCAGAGGCCATGGGGGAAGTGGGCTGCTGAGATTCGCGATCCTGCTCGGAGAGTACGGCTTTGGTTAGGTACTTTCGAAACTGCAGAAGAAGCTGCTATGGTGTACGACAATGCCGCTATTAAGCTTCGTGGACCCGACGCTTTAACAAACTTTATCACGCCGCCGCAGAGAGAAACACCGGTAGAACCCTCCGCCGTGAAGCCCGAAATGAAAGTAATCGTCGACGCTGACGCCGACGCCGAAGCAGAAGCCTCCGGGTCTGGTAACTCCGGTTACGATTCCGGCGAAGATCGTTGTGTTCCTCTCTCTTCGCCTACGTCAGTCTTAAATTTCTGCAGTAACTCCGGCGAGTCACAGCAATCGGAGGAACAAAACGAAGTTTGTGAAGTTTTCAGAGAATGTCAAGGTGAGACAAACTTGTTAGACGAAACGGCGTCGTTTTTCCAACACGAGTTTCCTATGCCTTGTTGGGACGACGTGTTCAACTTCGAAACACCAGAGTTTCCTATGTTGTTTGAAGAAGAACAAACCATGGTGTTTGATGAAAACACGACGCCGTTTTTGTGTGATCAAGAATTAAACGACAGCATTGTTCTTGCTGACTCACTCATAGATTTCGACAAAGCTTGTTTCTCTTCACCCTCTTCATCGTTATGCCAAGTGGATGATTTCTTCCAAGATATTTTGCTAGGCTCAGATCCTCTAGTTGTTCTTTGA 1086 0.4641 MEHHHQQQQLPSKSILCKYTEHHTVTKKVITTKKTANSNKTNSTIYPRVVQISVTDPDATDSSSDEEETFSRKRTKRYIHRVEIEAAAKAVVNRKRPAGETSTVKRPVKVPAITSGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTNFITPPQRETPVEPSAVKPEMKVIVDADADAEAEASGSGNSGYDSGEDRCVPLSSPTSVLNFCSNSGESQQSEEQNEVCEVFRECQGETNLLDETASFFQHEFPMPCWDDVFNFETPEFPMLFEEEQTMVFDENTTPFLCDQELNDSIVLADSLIDFDKACFSSPSSSLCQVDDFFQDILLGSDPLVVL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1872 361 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Psa5g1872 361 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Psa5g1872 361 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Psa5g1872 361 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Psa5g1872 361 SUPERFAMILY DNA-binding domain 118 174 IPR016177 GO:0003677
Psa5g1872 361 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Psa5g1872 361 CDD AP2 118 174 IPR001471 GO:0003700|GO:0006355
Psa5g1872 361 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Psa5g1872 361 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 352 - -
Psa5g1872 361 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 15 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1872 Psa-Chr5 143552935 143555174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1872 17 353 AP2-EREBP Transcription Factor Family AT4G27950 37.912 4.55e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa5g1872 AP2 4.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1872 - - lang:109327510 337.421