Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1866 ATGGATGAGAGCTTATATGATATATTTGAAGACAGAACAGACGACGATCTTTTTGCCATTTTGGAGAGTCTAGAAAACTTCACTGATTTTCCTCTCATCAACAACAACAACCACCCTGAAACTGTTATTACTCCGAAAGAGAACGATTCAACTTCCACCTCAAGATTACTGTCTCAGAAATCAGTCTCTTCTCAACAAGATTCTGAAACTGAAGTTGAAACTGAACACAAAAACAAGAGACAGAAACTCACACCGTCTTTGTTGCAGGAGCAGATCATTAACAGTGATGGACAACAAAGGGTTTCTCACATTACCGTCGAACGTAACCGAAGAAAGCAGATGAATGAACACTTATCCGTTCTAAGGTCACTCATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCAATAATCGGAGGCGTAGTCGATTACATCAACGAGTTGCAACAACTACTCCAAGCACTCGAAGCGAAGAAACAAAGAAAAGTATACAACGAAGTCCTAAGTCCGAGATTAGTTTCATCGAGTCCACGGCCTTCGCCGCTAAGTCCGAGAAAACCACCATTGAGTCCAAGACTAAACCTACCCATTAGTCCAAGAACTCCGCAACCAAGTAGCCCTTACAAGCCAAGATTGCAACAAAGCTACAACAATATTTTGCTTTCACCTCTTGACCCATCTCCTACTACTTCATCCGCTTCATCTGTGAATGATAATATCAATGAACTTGTTGCGAATTCTAAGTCTCATATTGCTGACGTGGAGGTGAAGTTTTCAGGTCCTCATGTTCTTTTGAAAACGGTTTCTCAGAGAATTCCAGGACAAGCTTTGAAGATTATATCTGCACTTGAAAATCTTGCACTTGAAATTCTTCATGTTAACATTAATAGTACTTCTGATGATACCATGTTGAACTCCTTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCAGAAGAATTGGCTCAACAAATCCAGCAAACATTCTGCTAA 999 0.4024 MDESLYDIFEDRTDDDLFAILESLENFTDFPLINNNNHPETVITPKENDSTSTSRLLSQKSVSSQQDSETEVETEHKNKRQKLTPSLLQEQIINSDGQQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQLLQALEAKKQRKVYNEVLSPRLVSSSPRPSPLSPRKPPLSPRLNLPISPRTPQPSSPYKPRLQQSYNNILLSPLDPSPTTSSASSVNDNINELVANSKSHIADVEVKFSGPHVLLKTVSQRIPGQALKIISALENLALEILHVNINSTSDDTMLNSFTIKIGIECQLSAEELAQQIQQTFC* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1866 332 MobiDBLite consensus disorder prediction 181 207 - -
Psa5g1866 332 MobiDBLite consensus disorder prediction 172 210 - -
Psa5g1866 332 MobiDBLite consensus disorder prediction 69 83 - -
Psa5g1866 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 169 IPR036638 GO:0046983
Psa5g1866 332 MobiDBLite consensus disorder prediction 41 83 - -
Psa5g1866 332 SMART finulus 104 155 IPR011598 GO:0046983
Psa5g1866 332 MobiDBLite consensus disorder prediction 41 68 - -
Psa5g1866 332 PANTHER TRANSCRIPTION FACTOR FAMA 14 332 IPR044283 GO:0003700|GO:0010052
Psa5g1866 332 CDD bHLH_AtFAMA_like 102 172 - -
Psa5g1866 332 Gene3D - 89 164 IPR036638 GO:0046983
Psa5g1866 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 149 IPR011598 GO:0046983
Psa5g1866 332 Coils Coil 142 166 - -
Psa5g1866 332 Pfam Helix-loop-helix DNA-binding domain 99 150 IPR011598 GO:0046983
Psa5g1866 332 PANTHER - 14 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1866 Psa-Chr5 143221696 143225516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1866 15 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.836 7.85e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g1866 HLH 8.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1866 K20558 - gmx:100777437 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1866 5 143221696 143225516 Psa5g1866 5 143221696 143225516 ECH