Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1863 ATGGGAGATTCAAAGAGTCTGATACATGAGCTACTACAAGGATTGGAGTTGGCAAGAAAACTTAGAATTTATCTCAACGTATCTTCTTCTTCTTCCTCCATTGACCAAACACGTGAAGTTTTGATACATAAAATCATATCCACGTTCGAAAAGGCACTTGAAATTGTGAACCGTAAAGGACATGTTAATGTGGCTGAATCTTCACAACAGCAGCAGCAACAACAACAACACCCTTCAGCCTCAGGAACACTAGCCATGATCAGAATGTTGGATTCACCACCTTTAAGCTCTAGTCCAAGAAGTGAAGACTCTGATAGAGATTTTAAGAGCCGTGATGATCACAATACTCCCCGAAAAAGAAATACTCTACCAATTAGATGGACAAAACAAATTAGAGTTACACCTGGAATAGCAGTGGAAGGTCCTCTTGATGATGGATATATTTGGAGAAAATATGGCCAAAAAGACATTCTAGGAGCCACACATCCTAGAGGTTATTACAGATGCACTCACAGAAACATTCAAGGTTGTTTGGCAACAAAGCAAGTACAAAGATCCGACGAAGATCCAACAATCTTCGAAATCACTTACCGAGGAAACCACACATGCACAATCGGAAGTGCTTCCAATGTGGCTGTTCCAATTCCAACCTTGAATCCAAATGAGAATCAAGTAACAAACGTACACACAAACCAACAACTAATGAACCTGCGAACAGGTCTAAGAGTTCAGACAGAGAATCTAGATTTCCTCGACCAATCATATGCTCCGTTAATCCATTTCCATTCGAACCATGTTCTTGAAAGTAGCTTTGCTGAAAACTTCAACTCCCCTGCAACTTCTGGAATAAGTCACTTCTCGATGTCTTCGTCTCCGAGTGTGTTCCCGAATATGGCCAGTGAGATTATTCCATCCGCTACTTCTGTTGCAAATACGCCAACCACTGATTTAGATTTTCCATTTCAACAATTTCTATTTGATGGAGAGAACTTCACCTTTGATAGCTCGCAGTTTTTCCCTTGA 1023 0.4057 MGDSKSLIHELLQGLELARKLRIYLNVSSSSSSIDQTREVLIHKIISTFEKALEIVNRKGHVNVAESSQQQQQQQQHPSASGTLAMIRMLDSPPLSSSPRSEDSDRDFKSRDDHNTPRKRNTLPIRWTKQIRVTPGIAVEGPLDDGYIWRKYGQKDILGATHPRGYYRCTHRNIQGCLATKQVQRSDEDPTIFEITYRGNHTCTIGSASNVAVPIPTLNPNENQVTNVHTNQQLMNLRTGLRVQTENLDFLDQSYAPLIHFHSNHVLESSFAENFNSPATSGISHFSMSSSPSVFPNMASEIIPSATSVANTPTTDLDFPFQQFLFDGENFTFDSSQFFP* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1863 340 ProSiteProfiles WRKY domain profile. 138 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g1863 340 MobiDBLite consensus disorder prediction 93 127 - -
Psa5g1863 340 SUPERFAMILY WRKY DNA-binding domain 141 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g1863 340 Pfam WRKY DNA -binding domain 144 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g1863 340 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 3 337 - -
Psa5g1863 340 Gene3D WRKY domain 136 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g1863 340 SMART WRKY_cls 143 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g1863 340 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 337 IPR044810 GO:0003700
Psa5g1863 340 MobiDBLite consensus disorder prediction 100 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1863 Psa-Chr5 142533767 142536029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1863 3 321 WRKY Transcription Factor Family AT4G11070 35.093 5.06e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa5g1863 WRKY 1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1863 - - gmx:100812027 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3719 4 311992943 311995635 Psa5g1863 5 142533767 142536029 ECH
Psa3g0091 3 10221871 10222451 Psa5g1863 5 142533767 142536029 ECH
Psa5g1863 5 142533767 142536029 Psa5g1863 5 142533767 142536029 ECH