Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1852 ATGAAACATATGCTTTTCCTACTTATCACTTTTAAGATTATAAAAAAGAAGTTGACAAAGCTAAGAGAGAGAATGGGATTTCAAACAACACACAACACTAAGAAGTCAAAAGATGACTCAAACAACGCTCATGAACAACAACACTCTTTAATTCCAAGGGCACTCAATTTGACTCATCATAATTTAACCACAAATAATACCAAATTCATTCACTCTGGCTATGATTCATGGCTGGTAACACACCCTTCAGCATTGAGCTTATTTGATAAAATGATGGAAGGTGTCGATGAAAAAAGGATCGTCGTATTTTTAGATTACGACGGTACCTTATCACCTATTGTAAATGACCCTGATCGTGCTTTCATGTCTGATGAGATGCGTGCAGCAGTATCTGAAGTTGCTACTTATTTTCCAACAGCAATAATTAGTGGAAGAGGCAGAGAAAAAGTAAAAGATTTTGTGAAGTTAAATAATTTATATTATGCTGGGAGTCATGGTATGGACATAATGGCACCATCAGTGCCAATTAACCAATGTGACAAAACTACTCTTCACACAAATGGCAATGGAGTTCCCTTTCAACCTGCCAAGAAATTTTTGCCTGCAATTCAAGAGATATTAAAAAGATTAGAGAATGTAATAAAGGGCATAGAAGGTGCAAGTATAGAAGACAATCAATTTTGTATCTCTGTACATTTTCGACAGGTTCATGAAAAGGACTATAATGTTTTGGAAGAGAAAGTAAAGTCTGTGCTTGAAAAATATCCATTGTTCTGCATGACTGAGGGTAAAAAGGTTATGGAAATAAGGCCATCAATAAAATGGAACAAAGGAAATGCTCTAGAATATTTTTTAGAGACATTGGGATTAAGCAATTCCAACAATTTTCTTCCTTTGTATATTGGGGATGATAAAACTGATGAAGATGCTTTTAAGGTTATACGAAGTAGAGGGCAAGGTTATTCGATTATAGTGTCATCAACTCCAAGAGAAACATGTGCTTTGTACTCTTTGCGTGACCCATCAGAAGTACTAATGTTCTTGTCAAGGCTAGCAAAATGGAGGAAGAGATCTTAA 1077 0.3538 MKHMLFLLITFKIIKKKLTKLRERMGFQTTHNTKKSKDDSNNAHEQQHSLIPRALNLTHHNLTTNNTKFIHSGYDSWLVTHPSALSLFDKMMEGVDEKRIVVFLDYDGTLSPIVNDPDRAFMSDEMRAAVSEVATYFPTAIISGRGREKVKDFVKLNNLYYAGSHGMDIMAPSVPINQCDKTTLHTNGNGVPFQPAKKFLPAIQEILKRLENVIKGIEGASIEDNQFCISVHFRQVHEKDYNVLEEKVKSVLEKYPLFCMTEGKKVMEIRPSIKWNKGNALEYFLETLGLSNSNNFLPLYIGDDKTDEDAFKVIRSRGQGYSIIVSSTPRETCALYSLRDPSEVLMFLSRLAKWRKRS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1852 358 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 47 357 - -
Psa5g1852 358 Pfam Trehalose-phosphatase 103 342 IPR003337 GO:0003824|GO:0005992
Psa5g1852 358 Coils Coil 234 254 - -
Psa5g1852 358 Gene3D - 100 181 IPR023214 -
Psa5g1852 358 Gene3D - 191 358 IPR023214 -
Psa5g1852 358 MobiDBLite consensus disorder prediction 25 44 - -
Psa5g1852 358 SUPERFAMILY HAD-like 101 355 IPR036412 -
Psa5g1852 358 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 47 357 IPR044651 GO:0004805|GO:0005992
Psa5g1852 358 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 102 315 IPR006379 -
Psa5g1852 358 MobiDBLite consensus disorder prediction 25 46 - -
Psa5g1852 358 CDD HAD_TPP 101 344 - -
Psa5g1852 358 TIGRFAM T6PP: trehalose-phosphatase 98 353 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1852 Psa-Chr5 142028393 142035464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1852 98 348 Trehalose Biosynthesis Gene Families AT1G70290 28.077 2.06e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1852 K01087 - gmx:100809194 492.656