Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1844 ATGGTATGCGGAAGGTGTGTGAGTTCTATTTTTGTTCGAGCTGGAATTTTGAACAGGAGATTGCGACTCAACTTTGTTGGGAAGGGATTGTTGCCTAGAGTTGATCCACAGCTTGCCGTTTATTTTCCGAATCGTGTGTTTAAGAGGTATCTAGGGATGATGGTTGATACAGGTTCTATGTCAACAAGGGCCGGACCCTCTATGGATACGGCGTCGCAGAAAGATGATGATTCTGCTCGTTCTGGTTTTGTTACTGGTGGATGGAAGAGTGAAGATGAAAGACTTGTCTGTGGGTATTCAAGCTTTAGGGGGAAGAGAGTGACCATGGAAGATTTCTATGATGTTAAGACATCAATCATTGACGGTCGTTCAGTGAGCTTATTTGGAATATTTGACGGTCATGGCGGTTCTCGTGCTGCTGAGTATTTGAAGGATCATCTATTTGAAAATCTCACGAAGCATCCAAAGTTTTTGACGGATACCAAATTGGCTATAAGTGAAACATATCAGCAGACCGATGCTGAGTTTCTGGACTCCGTAAAAGATAATTTCCGGGACGACGGTTCTACTGCTTCAACAGCTGTTTTGGTTGATAACCATCTTTATGTTGCTAATGTTGGAGATTCTAGAACTGTAGTATCAAAAGCTGGAAAAGCAATTGCTCTCTCTGAGGATCATAAACCTAATAGAAGTGACGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCTCGTGCATTTGGCAACCGTATGCTGAAGCCATTTGTTGTAGCAGAACCTGAGATCCAGGAGCAGAAAATAGATGAAGAAACCGAGGTGCTTGTTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATGATGCTGTTTCTATTGCACGTGCGGAAGAGGCAGCCGAGGCAGCTGCTCGGAAGTTAACAGAAGCCGCATTTAATCGCGGTAGTGCTGATAACATTACTTGCATTGTGGTACGATTCAATCATGAAAAAAGACACCCAGCTAATCCTGATAAAGCAGATCCAGCTAGCAGTCAGCATGCATGA 1092 0.4432 MVCGRCVSSIFVRAGILNRRLRLNFVGKGLLPRVDPQLAVYFPNRVFKRYLGMMVDTGSMSTRAGPSMDTASQKDDDSARSGFVTGGWKSEDERLVCGYSSFRGKRVTMEDFYDVKTSIIDGRSVSLFGIFDGHGGSRAAEYLKDHLFENLTKHPKFLTDTKLAISETYQQTDAEFLDSVKDNFRDDGSTASTAVLVDNHLYVANVGDSRTVVSKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQEQKIDEETEVLVLASDGLWDVVQNDDAVSIARAEEAAEAAARKLTEAAFNRGSADNITCIVVRFNHEKRHPANPDKADPASSQHA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1844 363 SMART PP2C_SIG_2 92 342 IPR001932 -
Psa5g1844 363 Gene3D - 87 351 IPR036457 -
Psa5g1844 363 Pfam Protein phosphatase 2C 98 335 IPR001932 -
Psa5g1844 363 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 47 349 - -
Psa5g1844 363 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Psa5g1844 363 SMART PP2C_4 86 340 IPR001932 -
Psa5g1844 363 PANTHER ALPHABET, ISOFORM E-RELATED 47 349 - -
Psa5g1844 363 CDD PP2Cc 96 342 IPR001932 -
Psa5g1844 363 ProSiteProfiles PPM-type phosphatase domain profile. 96 342 IPR001932 -
Psa5g1844 363 SUPERFAMILY PP2C-like 93 344 IPR036457 -
Psa5g1844 363 Coils Coil 308 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1844 Psa-Chr5 141531529 141539041 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1844 1 346 PP2C-type Phosphatase Gene Family AT5G53140 64.525 6.29e-162 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1844 K17506 - gmx:100805795 532.717