Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1832 ATGAACATTCTCAATCCCATACTCATCATCCTAATCTGTTTCCATTTCCTCTTCAACCCTCATCAAACACAAACACTAGCACAATCAACCACAGAAACATGTTTAGACACTATTTGCCACACAAATCAACCACTAATCCGATTCCCATTCTACATAGAAACAAAACAACCAAACAACACATGTGGCTACCCAGGTTTCAAACTACTATGCAATAATAAAACTGAAAAAAACCAAACACTTCTCAATCTACCTTACATGGAAGAACTCAACATCCAAAAAATAAACTATGCCACACAAGAACTCTTCGTCAATGATCCCAATAACTGTCTCGCAAAACGACTTCTCTCACTTAACCTCTCTGCTTCTCCATTCCATGCCGTTTACTATCAACAATTCACCTTTTTTAACTGTTCCGTTCATTTCAAATATCTCACGTCTCGTTACAAACCGATACTTTGTCTAAGTGATTCTTCCAAGTATAACGTTTTTGCGACACCGTCGCGCACGGTGGTTTTGCACTTGTCGTCTGTTTGTGACATGGTTGACACCGTGAATGTTCCGGTTCAATCGCCGTTTTATGATCATGTCTTGTCGTCTGAACTCAACGACGATCTCCGGTTGTCGTGGAATTCGCCGCCGTGTGGTAGGTGTGAGTCTCATGGTGGAAGATGTGGCTTTCAAGACAACTCCACTTTTGAAATTGCTTGTTACAATGTCCCTCCAACACAAGGGATTTCCCATGGTGCAAGTTACGCCATAGCCATATGTTTTGGAGTACCAACACTGTTATGCTTCATTTCGTTATTGAGCTGGATATGCAGCAAGTTCAGATTTGGGATTCATGGTTGGACTTTGGCTCGTGAGACAGTGGAAGATTTTGAGTCTCTTATTGATCCACAACATGATACCAATATTTTGGGTCTTGATAAACCTACAATTGAATCTTACCCAAAAATAGTAATAGGTGAGGATGGGATTCACTTGCCAAGACCTAATGATAAAACATGCTCAATATGCTTGTCTGAGTATATGCCTAAAGAGACGGTGAAAACTATGCCTGACTGTGAACATTGCTTTCATGCGCAATGCATCGATGAATGGCTTCCGCTGAATGCGTCGTGTCCGATCTGTCGAACTTCTCCTCCATGGTTACCGTCACAAAATCTAGCTCAATCATGA 1179 0.4131 MNILNPILIILICFHFLFNPHQTQTLAQSTTETCLDTICHTNQPLIRFPFYIETKQPNNTCGYPGFKLLCNNKTEKNQTLLNLPYMEELNIQKINYATQELFVNDPNNCLAKRLLSLNLSASPFHAVYYQQFTFFNCSVHFKYLTSRYKPILCLSDSSKYNVFATPSRTVVLHLSSVCDMVDTVNVPVQSPFYDHVLSSELNDDLRLSWNSPPCGRCESHGGRCGFQDNSTFEIACYNVPPTQGISHGASYAIAICFGVPTLLCFISLLSWICSKFRFGIHGWTLARETVEDFESLIDPQHDTNILGLDKPTIESYPKIVIGEDGIHLPRPNDKTCSICLSEYMPKETVKTMPDCEHCFHAQCIDEWLPLNASCPICRTSPPWLPSQNLAQS* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1832 392 Pfam Wall-associated receptor kinase C-terminal 174 237 IPR032872 -
Psa5g1832 392 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 387 - -
Psa5g1832 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 382 IPR013083 -
Psa5g1832 392 SUPERFAMILY RING/U-box 330 382 - -
Psa5g1832 392 Pfam Ring finger domain 335 378 IPR001841 -
Psa5g1832 392 SMART ring_2 336 377 IPR001841 -
Psa5g1832 392 ProSiteProfiles Zinc finger RING-type profile. 336 378 IPR001841 -
Psa5g1832 392 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 387 - -
Psa5g1832 392 Pfam Wall-associated receptor kinase galacturonan-binding 34 105 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1832 Psa-Chr5 140459100 140461242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1832 32 381 C3H Transcription Factor Family AT2G46495 34.746 2.29e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1832 - - gmx:100818969 481.1