Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1813 ATGATTATCAAGCGGAACTTGAAATCTCAAATGCCGCCTTTGAAACGGTGTAGACTCGGTGACTCGCTTGGAGAAGAGGACGACTGTTCTTATGCTTCTAAGAAGAGGAAAACGAGTGGTTATTATTATCCTTTGAACCTTTTGGGGGATGTTGCTGCCGGTTTGATTCCGGTCAGTTTTCACGGTTTGTTGAGTGCTGGTGTATCGGAGAGGGGATTCTCTGCGTCTTGGTGCACGCAAGTTCCGTGCTCCCCCGGTGAAGTTGAGTCGAAGTCGAAAGAGGAGATGGTTCCGGTGAAGACAAATCAGGTTCAGCGACCGCCATTGGTTAGAACTTCGAGAGGGAGAGTTCAGGTTCTTCCTTCTCGTTTTAACGACTCTGTTATTGATGATTGGAAGAAGGATGGAAAAACCAGTTTGCGTGATTGTGAAGTTGAATTTGAATGCAACAAGGACAGGGTAGTAGTACCCAAAACTTGCAATAACAATGTCAGAAAAGGGCGTAACAATGGGAAAGTTGGTTATAAGCAACGCAAGTATTTGGCATTGTGTGGGGAGGATGATGTTACCGCGAGTGGGCGGCATAAGAGTTTTGGTAGAAGGAACGGTTCAGCTTTGTATAAGGATGAAGTTGATTTGGCTATGGGTAGTGATGATATAGTTGAATGGAAGGAGAATAATGGAGAGAAGAAAGATGGGTTATATGGGCCAGAAGATTTTTATGCCTCTGATATAGTGTGGGCCAAAGCTGGGAGGAAGGAACCTTTTTGGCCAGCTGTTGTTATTGATCCTGTCAAACATGCACCTGAGTTGGTCCTAAGATCTTGTATAGCTGCTGCTGCATGTGTCATGTTTCTTGGCAATGCTGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCATGATCTTTCCATTTATGGATTTTGTTGACAGGTTTCAAGAGCAGCCTGAATTGAGTAACTATAGTCCCTCTGACTACCAAATGGCAATAGAGGAGGCGTTTTTGGCCGACCAAGGCTTTACAGAGAAGTTGATGGATGATATAAATGCAGCAGCTTGTGCTACTGTTTATGATGATACTATTCTGAAATCCTCCTTCCGGGAGGTCTGTGGTTCAAACCAGTATGGAAGAGCAGGAAAACATTTTCTGAACCAGGATTTATTTGATAAGAAAGACTCACGATCATGTGAAGCGTGTGGATTGACTCTTTCTTACAAGATGTCAAAGAAAACTAATGGTTTGACTCCGAATGGTCAACTCCTATGTAAAACATGTGCAAGGTTAACGAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGAAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGTGACCAAATTTCGAGAAACCATTTCAAGGATCTTGAAAGCACCGATTATTACTGCCCTACATGTAGAGGCAAGTTTGACTTTGAGTTATCTGATTCAGAAAAATCAAAGACAAAAGTCAGATCGAACCGAAACAGTGGGCAGCTAGTGCTTTCAAATAAGGTCAATGTTCTCTGCAATGGTGTGCAAGGCATATATTTTCCAAGCCTACACTTAGTTGTGTGCAGGTGTGGTTTTTGTGGGACAGAAAAACAAGCTCTTAGCGAATGGGAAAGGCACACGGGTTCCAAATTAAGAAATTGGAAAACAAGTATTACTGTGAAAGACTCTAGGCTACCTTTGGAACAATGGATGCTGCAGGTTGCCGAAGTTCATGCTAATGCTCTAGTTTCCGTCAAACCTAAAAAACCTTCTTTAAAAGAAAGGAAGCAGAAGTTGCTTACCTTCTTGAAAGAGAGGTATGAACCTGTTTATGCTAAGTGGACTACAGAGCGCTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAATAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCACCAAGAATGCTATGGAGTATTAAATGTTAGAGACTTTACATCTTGGGTCTGTAAAACCTGCGAGACACCTAAAATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATATTGACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCGTTTGCTAGTGATGAGAAAATGGAACCTGCTTTGGGAATTCTTATCTCGTTTGCTAGTGATGAGAAAATGGAACCTGCTTTGGGAATTCTTAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCACGGTTCCTGCACACAGTGCTGCAAATGCTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTACCGAATGGAGTTGCATTGTTCGAAGAAAAATGGGAAGACAATAACAAAAATGGTTTCATATTGTGCTTACCACAGAGCTCCAAATCCAGACAATGTTTTGATTTTGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGTCTTCTTCAAAAGAAAAAAATTGGATCAAGATTAATCTCATCTAATAGAATAAAGCAAGAGACTCCTATTAATATCACTGAGCATGACCCACTCTCTGCTGCTCGGTGTCGTATCCTTAAAAGAACAAATCATACCAGAAAGAGAGCATCTGATGAAGCAGTTTTTCATCAAGCGAGGGGTCACTGCCACCATCCTTTGGATGCAATACAGAGTTTAAATGCCCACAGACAAGTAAAGGAGCCTCAAGCTTTTTCTTCTTTCAGAGAACGACTTTACCACTTACAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGCCTCTTTGCACGTAGGAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGGGAACAAGTAAGACGCAGCATTGCTGATTTGAGGGAGGCACACTATAGAGCAGAAGGGAAAGACTGCTACCTGTTTAAGATAAGCGAAGAAGTGGTGGTTGATGCCACTGATAAAGGGAATATAGCACGACTAATCAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGAGATGATGAGAGCCGAATTGTACTTATTGCAAAGACCAACGTATCTGCTGGTGACGAGCTAACTTATGACTACTTATTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCCTGCATGTGTAAAGCTTCGAGTTGCAGGAAATTCATGAATTAG 3234 0.4212 MIIKRNLKSQMPPLKRCRLGDSLGEEDDCSYASKKRKTSGYYYPLNLLGDVAAGLIPVSFHGLLSAGVSERGFSASWCTQVPCSPGEVESKSKEEMVPVKTNQVQRPPLVRTSRGRVQVLPSRFNDSVIDDWKKDGKTSLRDCEVEFECNKDRVVVPKTCNNNVRKGRNNGKVGYKQRKYLALCGEDDVTASGRHKSFGRRNGSALYKDEVDLAMGSDDIVEWKENNGEKKDGLYGPEDFYASDIVWAKAGRKEPFWPAVVIDPVKHAPELVLRSCIAAAACVMFLGNAGNENQRDYAWVKHGMIFPFMDFVDRFQEQPELSNYSPSDYQMAIEEAFLADQGFTEKLMDDINAAACATVYDDTILKSSFREVCGSNQYGRAGKHFLNQDLFDKKDSRSCEACGLTLSYKMSKKTNGLTPNGQLLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDQISRNHFKDLESTDYYCPTCRGKFDFELSDSEKSKTKVRSNRNSGQLVLSNKVNVLCNGVQGIYFPSLHLVVCRCGFCGTEKQALSEWERHTGSKLRNWKTSITVKDSRLPLEQWMLQVAEVHANALVSVKPKKPSLKERKQKLLTFLKERYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGVLNVRDFTSWVCKTCETPKIKRECCLCPVKGGALKPTDIDTLWVHVTCAWFRPEVSFASDEKMEPALGILISFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSKKNGKTITKMVSYCAYHRAPNPDNVLILQTPLGVISTKSLLQKKKIGSRLISSNRIKQETPINITEHDPLSAARCRILKRTNHTRKRASDEAVFHQARGHCHHPLDAIQSLNAHRQVKEPQAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREAHYRAEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSAGDELTYDYLFDPDEPDEFKVPCMCKASSCRKFMN* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1813 1077 SMART PHD_3 437 489 IPR001965 -
Psa5g1813 1077 SMART PHD_3 758 814 IPR001965 -
Psa5g1813 1077 SMART PHD_3 631 678 IPR001965 -
Psa5g1813 1077 ProSiteProfiles PWWP domain profile. 242 311 IPR000313 -
Psa5g1813 1077 Gene3D - 237 343 - -
Psa5g1813 1077 SUPERFAMILY Tudor/PWWP/MBT 235 339 - -
Psa5g1813 1077 SMART set_7 935 1058 IPR001214 GO:0005515
Psa5g1813 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 492 IPR013083 -
Psa5g1813 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 816 IPR013083 -
Psa5g1813 1077 CDD PHD_ATX3_4_5_like 631 677 IPR042011 -
Psa5g1813 1077 ProSiteProfiles Post-SET domain profile. 1061 1077 IPR003616 -
Psa5g1813 1077 Pfam PWWP domain 244 336 IPR000313 -
Psa5g1813 1077 Pfam PHD-finger 644 678 - -
Psa5g1813 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 680 IPR013083 -
Psa5g1813 1077 CDD ePHD_ATX3_4_5_like 686 813 IPR041955 -
Psa5g1813 1077 Gene3D SET domain 832 1077 IPR046341 -
Psa5g1813 1077 ProSiteProfiles Extended PHD (ePHD) domain profile. 683 814 IPR034732 -
Psa5g1813 1077 CDD SET_SETD1-like 922 1073 - -
Psa5g1813 1077 PANTHER PHD FINGER PROTEINS 1 732 - -
Psa5g1813 1077 PANTHER PHD FINGER PROTEINS 733 1077 - -
Psa5g1813 1077 ProSiteProfiles Zinc finger PHD-type profile. 629 680 IPR019787 -
Psa5g1813 1077 Pfam PHD-zinc-finger like domain 685 813 - -
Psa5g1813 1077 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 732 - -
Psa5g1813 1077 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 733 1077 - -
Psa5g1813 1077 SUPERFAMILY FYVE/PHD zinc finger 436 492 IPR011011 -
Psa5g1813 1077 SUPERFAMILY SET domain 928 1074 IPR046341 -
Psa5g1813 1077 Pfam PHD-finger 437 489 IPR019787 -
Psa5g1813 1077 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1077 IPR025780 -
Psa5g1813 1077 Pfam SET domain 946 1051 IPR001214 GO:0005515
Psa5g1813 1077 ProSitePatterns Zinc finger PHD-type signature. 632 677 IPR019786 -
Psa5g1813 1077 ProSiteProfiles SET domain profile. 935 1052 IPR001214 GO:0005515
Psa5g1813 1077 ProSiteProfiles Zinc finger PHD-type profile. 435 491 IPR019787 -
Psa5g1813 1077 SUPERFAMILY FYVE/PHD zinc finger 630 694 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1813 Psa-Chr5 139487732 139496713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1813 632 813 C2H2 Transcription Factor Family AT3G14740 32.804 6.11e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa5g1813 zf-HC5HC2H_2 2.4e-22 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1813 - - aprc:113853254 1731.46