Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1808 ATGTATAGAGACAATGGTCTTCTTTTCCCATGGCCATATCTACACAATTTCTCTCAAGAGCTTCATCAACTTGAAGAATACTGCAAAACCCAGAAGCTCAATGCTTCAATGAGTGACATTGTTCAGTTTTCTGCGATGTCCGAGTATGATTTTGCAGCTGAAGGAGATTTGTTCAAAGCACCTGAACCGATTATTGAAGAGTCGGACATTGATCTGGATCCCATGACAGCAGCCATCTCAATGATATCTTGTGACGAAGATATAAAATCCACGGATATTTCTATTCTTCAAAACGAACAGCTTCTCAGCGATGTATTCTACGAATGCAAGAAGGATCTACTTGAAAAGACAGTGATGGAGTCACCACTCTCTGAGATTCTGGAAATTAGAATTCCACTTCTGAACATCGATGAGAATGCAGTTCAAGAAAACAAGCCACTTCCTGATATGCCATTATTACCGAAGAGCGTCAGCTCGAGGAGTTTAAGTTCGATGGATTGGATGCATGGATCTGCAATGAACCCTGCTGTGTTTGGTGTCTCGGGAATAGATTTTGATGCGGTTTATGGCATACGGAGATCATTTAGTGAAGGAGATATAAAGACTCTTGGCAACGGTAATAATGTAAACACGGTCCAATCTTCCCGAGAGAGGCCCTTTTTATGCAACAACGAGGAGCGCTTACAAAAGCTCTCCCGATACAGGAACAAGAAGACAAAGAGGAATTTTGGGAGGAAAATCAAGTATGCTTGTAGGAAGGCTCTAGCTGACAGTCAACCAAGAATTCGCGGAAGATTTGCAAAGAATGAAGAATGTGAGGCAAAGAGGGAATGA 834 0.4185 MYRDNGLLFPWPYLHNFSQELHQLEEYCKTQKLNASMSDIVQFSAMSEYDFAAEGDLFKAPEPIIEESDIDLDPMTAAISMISCDEDIKSTDISILQNEQLLSDVFYECKKDLLEKTVMESPLSEILEIRIPLLNIDENAVQENKPLPDMPLLPKSVSSRSLSSMDWMHGSAMNPAVFGVSGIDFDAVYGIRRSFSEGDIKTLGNGNNVNTVQSSRERPFLCNNEERLQKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFAKNEECEAKRE* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1808 277 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 28 275 - -
Psa5g1808 277 PANTHER CCT MOTIF FAMILY PROTEIN 28 275 - -
Psa5g1808 277 ProSiteProfiles CCT domain profile. 227 269 IPR010402 GO:0005515
Psa5g1808 277 Pfam CCT motif 227 269 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1808 Psa-Chr5 139279057 139282202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1808 226 273 C2C2-CO-like Transcription Factor Family AT5G57660 52.083 3.09e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa5g1808 CCT 4.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1808 - - gmx:100814332 395.201