Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1803 ATGGTGTTGAAAATGGTGGCATCATCATACGAAGATAGCCGTCGCAAAAGAATGGAAGAGAATCGGAAGAGAATGGAGGCTCTCAATCTCACTCAGCTTTCTCAATTCCTTCGCAAATTATCTTCTCCCATTTCAAAACCCTCGCCGTCTAAACCTCGCACCTCCGAGAAGCAGCTTGTTGTTGTCAGAAGATCCGGCCGTATCGCCAACCTGCCCGCTCCCGTTTACAAAGAAAGGGGTTATAATATGTATACTGATTATTCGCGTGTATATGCTTCCGAAGAAGCCCGAGTGGAAGCGTTGTACAAGGCGGAGAAGTTGCAGTCCGAATTAAACTCGAAGCATCCAATTTTTATTAAGACAATACGTCAATCTCATATCACTGGTGGATTCTGGCTGGGTCTTCCAGTTCATTTCTGCAAGCAAAATCTTCCAGAACAGGACGAGTTCATGACTTTAATTGATGAGGATGGAGATGAGTATCGAACTACATTTTTGGCTCAAAAAAAAGGACTAAGCGCTGGATCGAGACGTTTTGCCATTGCTCATAAACTTGCTGACGGGGACGCTTTAATTTTTGAATTAGTTAATCGCACTACGTTCAAGGTGTACATTATTAGAGTGAACCCTTCAAAGGGTGAAGATCTCGAGTGA 654 0.4358 MVLKMVASSYEDSRRKRMEENRKRMEALNLTQLSQFLRKLSSPISKPSPSKPRTSEKQLVVVRRSGRIANLPAPVYKERGYNMYTDYSRVYASEEARVEALYKAEKLQSELNSKHPIFIKTIRQSHITGGFWLGLPVHFCKQNLPEQDEFMTLIDEDGDEYRTTFLAQKKGLSAGSRRFAIAHKLADGDALIFELVNRTTFKVYIIRVNPSKGEDLE* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1803 217 Pfam B3 DNA binding domain 118 207 IPR003340 GO:0003677
Psa5g1803 217 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 5 212 - -
Psa5g1803 217 SUPERFAMILY DNA-binding pseudobarrel domain 111 209 IPR015300 -
Psa5g1803 217 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 212 IPR044837 -
Psa5g1803 217 MobiDBLite consensus disorder prediction 1 22 - -
Psa5g1803 217 ProSiteProfiles B3 DNA-binding domain profile. 118 209 IPR003340 GO:0003677
Psa5g1803 217 Gene3D - 93 210 IPR015300 -
Psa5g1803 217 SMART B3_2 118 209 IPR003340 GO:0003677
Psa5g1803 217 CDD B3_DNA 116 207 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1803 Psa-Chr5 138862220 138864979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1803 5 215 B3 DNA Binding Superfamily AT3G19184 51.754 2.72e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa5g1803 B3 2.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1803 - - gmx:100794327 249.21