Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1802 ATGGTGGCAAAAATGGTGGCATCATCATACGAAGATAGCCGTCGCAAAAGAATGGAAGAGAATCGGAAGAGGATGGAGGCTCTCAATCTCACTCAGCTCTCTCAATCCCTTCACAAATCATCTTCCCCCATTTCAAAACCCTCGCCGTCCAAATCTCGCACCGTCAAGAAAGAGCTCGTCGCTGTTCGAAGATCCGGCCGTGTCGCCAACCAGCCTGCTCCTGTTTACAAAGAAGTTCTTATTGATTGCGATATGATGTCTGGAAATAGATCTTCGAGAGGAGGTTATAATATGTATAGGGATTATTCGAAGCGTGTGTATGCTTCCGATGAAGCTCGAGCGGAAGCATTGAACAAGGCGGAGAAGTTGCAGTCTGAATTAAACTCGCCGCATCCAATTTTTATTAAGACAATGCTCCAATCTCATGTCACTGGTGGATTCTGGCTGGGTCTTCCAGTTCATTTCTGCAAGCAAAACCTTCCAAAACAGGACGAAGTGATGACCTTGGTTGATGAGGATGGAGATGAGTCTTCAACTACATTTTTGGCTTATAAAACAGGACTTAGCGCTGGATGGAGAGGTTTTGCCATTGCTCATAAACTTGCTGACGGGGACGCTTTAATTTTTGAATTAGTTAATCGCACTACATTCAAGGTGTACATTATTAGAGTGAATGGCAGTCCTTCAGAGGATGAAGAGCTCGAGTGA 708 0.4477 MVAKMVASSYEDSRRKRMEENRKRMEALNLTQLSQSLHKSSSPISKPSPSKSRTVKKELVAVRRSGRVANQPAPVYKEVLIDCDMMSGNRSSRGGYNMYRDYSKRVYASDEARAEALNKAEKLQSELNSPHPIFIKTMLQSHVTGGFWLGLPVHFCKQNLPKQDEVMTLVDEDGDESSTTFLAYKTGLSAGWRGFAIAHKLADGDALIFELVNRTTFKVYIIRVNGSPSEDEELE* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1802 235 MobiDBLite consensus disorder prediction 27 50 - -
Psa5g1802 235 ProSiteProfiles B3 DNA-binding domain profile. 134 225 IPR003340 GO:0003677
Psa5g1802 235 SUPERFAMILY DNA-binding pseudobarrel domain 127 226 IPR015300 -
Psa5g1802 235 Pfam B3 DNA binding domain 134 223 IPR003340 GO:0003677
Psa5g1802 235 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 229 IPR044837 -
Psa5g1802 235 MobiDBLite consensus disorder prediction 1 55 - -
Psa5g1802 235 MobiDBLite consensus disorder prediction 9 26 - -
Psa5g1802 235 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 3 229 - -
Psa5g1802 235 CDD B3_DNA 132 223 IPR003340 GO:0003677
Psa5g1802 235 Gene3D - 108 226 IPR015300 -
Psa5g1802 235 SMART B3_2 134 225 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1802 Psa-Chr5 138857797 138860761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1802 5 233 B3 DNA Binding Superfamily AT3G19184 54.043 2.60e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa5g1802 B3 1.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1802 - - gmx:100794327 278.485