Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1800 ATGGAGTTGAATAACATTGAGTGTGTGACATCCTCAGATGGCATGGATGAAGATGAGATCCATCCACATCATGAGTTTTCTTCCACAAAGCATAGAAATGGTGCTGCAAATATCAATAATATTTTGGGTCCTAATGCCATTGCTCCTATAACCAGCGTTCATGAATTGCTTGAATGTCCTGTTTGTACTAATTCTATGTACCCTCCAATTCATCAGTGTCACAATGGTCACACACTATGTTCCACATGCAAAACACGGGTGCATAACCGGTGTCCGACATGTAGACAAGAGCTTGGCGATATTAGGTGTCTGGCATTGGAGAAGGTGGCGGAATCACTCGAGTTACCTTGCAAGTACTACTCCCTCGGATGTCCTGAAATCTTTCCTTACTACAGCAAGCTTAAGCATGAGACAGTCTGTAATTTTAGACCATATACGTGTCCTTATGCTGGATCAGAGTGTTCCACTGTTGGCGATATTAACTTCCTCGTTGCTCATTTGAGGGATGATCATAAGGTCGACATGCACACGGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCTCGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCATTGCTTTGGCCAATATTTCTGCCTTCATTTCGAAGCTTTTCAGCTTGGCATGGCTCCTGTTTACATGGCATTCCTTCGTTTCATGGGCGATGAGAATGAAGCTCGGAACTACAGTTATAGCCTGGAAGTTGGGGCCAATGGCAGGAAACTAATTTGGGAGGGTACACCACGGAGTGTTCGTGATAGCCACCGAAAAGTCAGGGATAGCCATGACGGCCTCATAATTCAAAGAAATATGGCACTATTTTTCTCGGGCGGGGATAGAAAGGAGCTGAAACTTAGAGTCACAGGAAGAATATGGAAGGAACAGAATCAAGATGCTGCAGTGTGCATACCTAATCTATGTAGCTGA 963 0.4403 MELNNIECVTSSDGMDEDEIHPHHEFSSTKHRNGAANINNILGPNAIAPITSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYTCPYAGSECSTVGDINFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNQDAAVCIPNLCS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1800 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 163 IPR013083 -
Psa5g1800 320 SUPERFAMILY RING/U-box 50 99 - -
Psa5g1800 320 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Psa5g1800 320 SUPERFAMILY TRAF domain-like 112 304 - -
Psa5g1800 320 CDD Sina 173 301 - -
Psa5g1800 320 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 164 300 IPR008974 GO:0005515
Psa5g1800 320 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270
Psa5g1800 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 111 IPR013083 -
Psa5g1800 320 CDD RING-HC_SIAHs 57 95 - -
Psa5g1800 320 Pfam Seven in absentia protein family 101 300 IPR018121 GO:0005737|GO:0006511|GO:0007275
Psa5g1800 320 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 312 - -
Psa5g1800 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1800 Psa-Chr5 138824176 138826913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1800 10 307 C3H Transcription Factor Family AT2G41980 72.148 9.02e-163 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1800 K04506 - gmx:100810573 633.639