Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1785 ATGATAGCTCCAGCTCAGCCCCCCATGCACCACAACCAGGCCCCATCTTCACCTTTGTCAGCAAACTCCCCTGCAGTAGACTTCAGTCCACCTTTAATAGCAATGGTTGTCGTCGTTGCCGCCGCCTTCGTCATTGTAACCTATTCCCGCCTCCTCACTCGCCACCTATCACCTCCCATACACCGCCTTATCCAACGCTTCCATAGCCGGCGTTTCCTCCCTCCCTCCTCCTCATTAGGTGACATCGAATCACTGCAATACGAATCATCAACGTTTGAAGCTCCCCACACCTTTGGCTTAGACGAATCCATTATCAAAACTATTCCGTTCTTCATCTATACAACTAAATACGAACAAGAATCCCTCCGTGATTGTGCCGTTTGTTTACTTGAATTCGAAGATCATGATTATGTTCGCACTCTACCTCTCTGTTCGCACACCTTTCATCTTGATTGTATCGACGCTTGGCTTCGTTCGCACGCTAACTGTCCTCTCTGTCGCGGTGTTCTTCTCTGTGAGTCTCCTTTCAGACCTCTCATGGCCGCTAGAATACGTCCATCGTTTCATGACCAAACGAATATCCTCCACCTCGATACACCTTTTCATAACTCGAACTCTGTACAACCGGTGCCGGAGATTACTCCTCATTCTCCGGTTATGAATAATGCCGACGAGAATCGGTTTATCAGACGCGAGGATTTTCTGTTGAAACGGTCTTATTCGTTTGGTTTTGAGAGAAGTTTGCCGTCAGAGAGGATGGTAATCGATCCTGCCGCGACCTCGCCGTGGCGGTATCGGAGAGGGAACACGAGTTTCTGGAGCAAGAGACCGTCGCCGTTTGGTTCATTAGGGAAGTCGAGAGTGTTTTCATTCAGATATTATAGAGGAATGAAATCTCCGTTTTTCCGCAGGAGAGGATTCTTTCCGTTGTCGGAGTCAAGTGTAAGGTACGCCGACGGAGGAACCTCGTGGCGGAGGAGCAAATCAATAGCGAGTCCAATGTTCTTAAGATCATCAGCCGCGGTATTCTCGTCGAGCCGTTTAAGATGCGGTGATCCGGAAGCGTTACTATCGCCGGAGAGATTCAACCGACGACGATGA 1101 0.4923 MIAPAQPPMHHNQAPSSPLSANSPAVDFSPPLIAMVVVVAAAFVIVTYSRLLTRHLSPPIHRLIQRFHSRRFLPPSSSLGDIESLQYESSTFEAPHTFGLDESIIKTIPFFIYTTKYEQESLRDCAVCLLEFEDHDYVRTLPLCSHTFHLDCIDAWLRSHANCPLCRGVLLCESPFRPLMAARIRPSFHDQTNILHLDTPFHNSNSVQPVPEITPHSPVMNNADENRFIRREDFLLKRSYSFGFERSLPSERMVIDPAATSPWRYRRGNTSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYADGGTSWRRSKSIASPMFLRSSAAVFSSSRLRCGDPEALLSPERFNRRR* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1785 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 171 IPR013083 -
Psa5g1785 366 CDD RING-H2_PA-TM-RING 124 167 - -
Psa5g1785 366 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 341 - -
Psa5g1785 366 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 341 IPR044675 -
Psa5g1785 366 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Psa5g1785 366 Pfam Ring finger domain 124 167 IPR001841 -
Psa5g1785 366 SMART ring_2 125 166 IPR001841 -
Psa5g1785 366 SUPERFAMILY RING/U-box 104 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1785 Psa-Chr5 138211515 138217041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1785 21 365 C3H Transcription Factor Family AT3G18930 49.738 8.15e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1785 - K19041 gmx:100806115 491.115