Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1778 ATGTTTTTTTTTTGTTTTTGTGATTATTACATATACAGAATCACTGAGTTTTCGCCATTTGAGGGTTTCCCTGAGTTTGATTGGGGAAGTGAAGCATCATACCAAAGTAATCACCTTTACATCAACGAGTTCAAGGATCTTGAAATTTTCAACTTCGATTTCAACCTCCCACTCTTCCATGAAAATTTTGAGGTTAACCAAAACCCCCTCAATGTTGTCTTTCCTGTATCGGAACATTGCAACGACAAAGCTGAGAGCAGTGGCGAGTGTAGTTTTGCTGAATCCTCAGTGAAAATCGGAAATGGGTTTTCGAGTTTTGTGAAGGAAGAGGTGGAGGAATACGAGAATCAAGAACAGAGTCCATTGCCATATCCATTTCCATTGTCTAGTGGTAGTGCTAGTTTGATTAAGACTAGAAAGTCTTGTTTGGAATATGATGAGATTAAGAAACATTTTGACGTTCCGATAACACTAGCTGCTAAGAGATTGAACATTGGTTTGACCCTTTTAAAGAAGAGGTGCAGAGAGCTCAAAATCACAAGGTGGCCTCACAGAAAATTGAAGAGTTTGACGTTACTCATTGACAACCTTAAGGAAATGGGATTGGACAACGAGGTTGCTAAGTTGGAGAAGCAGAAAAAGTTGTTGGAGAAAATTCCAGGCATGGAATTGAATGAAGAAACCAAGAAATTGAGACAGGCTTGTTTCAAATCTAATTACAAGAAGAGAAGATTGATTACCTTCCATCATTGA 753 0.3838 MFFFCFCDYYIYRITEFSPFEGFPEFDWGSEASYQSNHLYINEFKDLEIFNFDFNLPLFHENFEVNQNPLNVVFPVSEHCNDKAESSGECSFAESSVKIGNGFSSFVKEEVEEYENQEQSPLPYPFPLSSGSASLIKTRKSCLEYDEIKKHFDVPITLAAKRLNIGLTLLKKRCRELKITRWPHRKLKSLTLLIDNLKEMGLDNEVAKLEKQKKLLEKIPGMELNEETKKLRQACFKSNYKKRRLITFHH* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1778 250 ProSiteProfiles RWP-RK domain profile. 128 211 IPR003035 -
Psa5g1778 250 Coils Coil 199 219 - -
Psa5g1778 250 PANTHER PROTEIN RKD1-RELATED 119 246 - -
Psa5g1778 250 PANTHER PROTEIN RKD4 119 246 IPR044607 GO:0003700
Psa5g1778 250 Pfam RWP-RK domain 143 190 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1778 Psa-Chr5 137748589 137750075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1778 143 244 AtRKD Transcription Factor Family AT5G53040 63.725 4.74e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Psa5g1778 RWP-RK 7.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1778 - - aprc:113850801 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1778 5 137748589 137750075 Psa5g1778 5 137748589 137750075 ECH