Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1771 ATGGCGTTGTCAACTCCACAAATACAAAGATTCCTCCTAACCAAGCTCCATAAACGCTGCTCCACCTCTTCCAAATCCAAAACTATTAACAGAAATAAAACCATAAACATCTTCAGTGCCGTTACCAACAGCCGAAGAAGCCGGTGCTACTCTGCCATAGCCATTGATGCACCTTCATCTTTGACGGACTCTCCTCCTATTAGATGGGGATCCGTTTCCTTGCAAGGTCCCCGCGAAGAAATGGAAGATGATATTGTTCTTCGACCTAATAGTCTCCAAGGTTTTTCTTTCGCTGCTGTATTTGATGGCCATGGAGGGTTTGCTTCTGTCCAGTTTCTCAGGGATGAACTATACAAGGAGTGTTATGAAGCTCTACAAGGTGGATTACTATTGCTTGGGAAAGATTTCAAAGCTGTTGAAGAAGCAATAAAACAGGCATTTGCAAAGGCGGATACAAGTTTGTTAAAATGGCTTGAAATGAAAGGGGAAGAGGAGGATGAGTCAGGTGCTACAGCGACTGCCATATTCCTTGGGGATAATAAGCTGCTAATTTCACATATTGGTGACTCATCTGTGGTTTTATGCAGATCTGGAAAACCAGAATTGCTGACTAGTCCTCACCGTCCCTATGGGAGCAACAAGGCTTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGATTGTCAATGGTAGGATTTGTGGAGATATTGCTGTATCTCGTGCATTTGGGGACATTCGATTCAAAACGAAGAAGAATGAGATGCTAAGAAAAGGAGTTCAGGAAGGAAGATGGACAGAAAAGTTCATTTCTCGTGTACAATTCAACAACGACTTGGTTGTTGCACGCCCTGATATTTATCAAGTAGCTCTTGGCTCAGATGCAGAATTTGTAGTCTTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTCAGATGCAGTTTCCTTTGTGAGGGAGCAACTACGAAAACATGGAAACACACAGCTAGCTTGTGAATCCCTTGCACAAGTTGTTTTGGACCAACGTACACAGGATAATGTCAGCATTATAATTGCCGATCTAGGGAAGACAGATTGGAAGAATGTGCCACTGCAGAAACAAAATGTCATATTTGAGCTTGTCCAAGCCGTCGCCACGGTTGGAATTGTGTCCGTTGGAATCTGGTTTTCATCACAGCTTTCTTTATAG 1197 0.4311 MALSTPQIQRFLLTKLHKRCSTSSKSKTINRNKTINIFSAVTNSRRSRCYSAIAIDAPSSLTDSPPIRWGSVSLQGPREEMEDDIVLRPNSLQGFSFAAVFDGHGGFASVQFLRDELYKECYEALQGGLLLLGKDFKAVEEAIKQAFAKADTSLLKWLEMKGEEEDESGATATAIFLGDNKLLISHIGDSSVVLCRSGKPELLTSPHRPYGSNKASLQEIKRIREAGGWIVNGRICGDIAVSRAFGDIRFKTKKNEMLRKGVQEGRWTEKFISRVQFNNDLVVARPDIYQVALGSDAEFVVLASDGLWDYMSSSDAVSFVREQLRKHGNTQLACESLAQVVLDQRTQDNVSIIIADLGKTDWKNVPLQKQNVIFELVQAVATVGIVSVGIWFSSQLSL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1771 398 ProSitePatterns PPM-type phosphatase domain signature. 97 105 IPR000222 GO:0043169
Psa5g1771 398 PANTHER PROTEIN PHOSPHATASE 2C 57 8 394 - -
Psa5g1771 398 PANTHER PROTEIN PHOSPHATASE 2C 8 394 IPR015655 GO:0004722|GO:0006470
Psa5g1771 398 Pfam Protein phosphatase 2C 70 350 IPR001932 -
Psa5g1771 398 ProSiteProfiles PPM-type phosphatase domain profile. 68 357 IPR001932 -
Psa5g1771 398 CDD PP2Cc 67 357 IPR001932 -
Psa5g1771 398 SUPERFAMILY PP2C-like 62 358 IPR036457 -
Psa5g1771 398 SMART PP2C_4 58 355 IPR001932 -
Psa5g1771 398 Gene3D - 67 364 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1771 Psa-Chr5 137566455 137570151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1771 1 334 PP2C-type Phosphatase Gene Family AT4G27800 60.778 1.33e-147 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1771 K04457 - vra:106776113 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1771 5 137566455 137570151 Psa5g1771 5 137566455 137570151 ECH