Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1763 ATGGGTAGTTTCAGTGGAGATGAGGATTGTCAGTTTTTTGATGCTCAAGAGGATGTTGTGTCAATTGGCTATGCAAATTCTGATGATGATAATGATAAAAGTGTTTCTGTTGATTTTGATTATGATGTGTGGATTCGGAGTCCGAGGAGTGTGAGAGAGCGTAGGGGGGAGTTTATGAAGAGCATGGGAATGAGTTTAGATGGAATTGTTGTTGAAAATTCATTTGATGTTGAGAAGGAAGAGATGATAGATAGAGTAAGAGGAAGTAGTGGTTTTGAAGAGGAATTTAGTTCGAGTGGGTTGTTGATGTCTTGTTGCTCTAGTGTGAGTTTTTCAGAGGAGTTTGGTTTAGTGGAGAGTAATAACTTGCCATGTAAAGATGAAAGTTCGGAGATAGGAGTAGGGACTAATGTGAATGTGAATGATGGTTCAGATCATTTGGTGGTTGCTAAGAAATCTGAGGATTCCGTGAATGTTAATGTTTCGGGGGCGTCTCCTTCTCAAGGATTGGTAGGTAGAGATTTTGAGGATTCGGATGGTGATGCGGTTACTGGAATCTTAAATAGGGTGAGAAGGGGTTGGTTAAGAAGATTGAAATCGATGACGTGTATGGTTGATACGCAGGGGGAAGGTGATGATTATAATGGGAGAGGAGAAGGGAGAATGTCAGTCTCAGGGTGTAGGCTTCAGAAAATAAAGGTCCGTCAAAGTAAGAAAAAAATCAAGGAGCTTTCGTCACTTTACTTGAGGCAAGATATTCAAGCGCACGAAGGTTCAATTTTGGCAATGAAATTCAGTCCCGATGGGCAGTATCTAGCCACTGGCGGCGAAGATGGCGTAGTTCGTGTGTGGCAAGTAGTTGAGGAGGATAGATGTAATGAAGTTCACATTCCAGAAATTGACCCTTCATGCATTTACTTTACGGTAAATAATCTTTCTCAATTGACACCATTGTTTATGGATAAGGAAAAACTTAGCCAACTGAAGAGCATGAGAAAAACATCAGATTCTGCTTGTGTTGTTTTCCCGCCTAAGATCTTCCGGCTGTTGGAAAAACCATTGCACGAGTTCCGTGGTCATGGAAGTGAAGTTCTGGATCTATCTTGGTCAAAGAAGAATTATCTTCTCTCGTCGTCAGTTGACAAAACTGTCCGACTATGGAAAGTGAATCATGAGCATTGCTTGAAAGTGTTTTCACACAGTAATTATGTAACATGTATACAATTCAATCCTGTCGATGAAGATTATTTCATTAGCGGATCCATAGACGGGAAAGTGCGAATATGGGCAATTCCTGATTGTCAGGTTGTTGATTGGACTGATGTTCTAGATATAGTGACTGCAGTATGTTATCGGCCCGATGGACAGGGAGGCATTGTTGGTTCTTTGGCGGGAAATTGTCGGTTTTATAAAATATCAGATAACCACTTGCAGTTAGATTCTCAACTATGCTTAGTTAGTAAAAAGAAACTTCCTGGCAGAGGGATAATGGGCTTTCAGTTTCTTCCTCAAGATTCCAACAAAGTTATGGTTACCTGTGCCGATTCACAAGTTAGAATCCTTGATGGGCTTAATGTGATTTGTAAATACAAAAGCCTTAACACAGGGAGCCCAATGTGTGCATCCTTTACTTCAGACGGGAAACATATTTTATCAGCATGCGAGGACTCAAATGTATATCTATGGAACATTGACCAGGAAGAGTCTAATGCGACGAAATCTAAGAAAATCAGGTCATGTGAGCGTTTTTTCTCAAATGCATCCGTTGCAGTACCTTGGCATGGTTTGAAACCTCAAATTACTGAAAATGAACAACTGAATGTCTCGGATAAAAAATCAGCTCAAGTTGCTATACAATTACACTCCACTCCACCTGCATCTTTCTCTTTGGGCCAAGAGTTTTTCTTGGAGTCTTTTCCAAAGGGATCTGCTACCTGGCCCGAGGAGAAGCTTCCTGTTTCGAGCTCCAAGGCTAAAAAAACATCATTTATGAAAAACTCCGAATACAAGTTCTTGAAATCTTCTTGCAAAAGCACCAACCGTGCTCACGCGTGGGGTATGGTTATCGTGACTGCAGGCTGGGACGGGAGGATAAAATCATTCCAAAATTACGGGTTACCTGTACCGGTTTGA 2133 0.4116 MGSFSGDEDCQFFDAQEDVVSIGYANSDDDNDKSVSVDFDYDVWIRSPRSVRERRGEFMKSMGMSLDGIVVENSFDVEKEEMIDRVRGSSGFEEEFSSSGLLMSCCSSVSFSEEFGLVESNNLPCKDESSEIGVGTNVNVNDGSDHLVVAKKSEDSVNVNVSGASPSQGLVGRDFEDSDGDAVTGILNRVRRGWLRRLKSMTCMVDTQGEGDDYNGRGEGRMSVSGCRLQKIKVRQSKKKIKELSSLYLRQDIQAHEGSILAMKFSPDGQYLATGGEDGVVRVWQVVEEDRCNEVHIPEIDPSCIYFTVNNLSQLTPLFMDKEKLSQLKSMRKTSDSACVVFPPKIFRLLEKPLHEFRGHGSEVLDLSWSKKNYLLSSSVDKTVRLWKVNHEHCLKVFSHSNYVTCIQFNPVDEDYFISGSIDGKVRIWAIPDCQVVDWTDVLDIVTAVCYRPDGQGGIVGSLAGNCRFYKISDNHLQLDSQLCLVSKKKLPGRGIMGFQFLPQDSNKVMVTCADSQVRILDGLNVICKYKSLNTGSPMCASFTSDGKHILSACEDSNVYLWNIDQEESNATKSKKIRSCERFFSNASVAVPWHGLKPQITENEQLNVSDKKSAQVAIQLHSTPPASFSLGQEFFLESFPKGSATWPEEKLPVSSSKAKKTSFMKNSEYKFLKSSCKSTNRAHAWGMVIVTAGWDGRIKSFQNYGLPVPV* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1763 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 286 IPR001680 GO:0005515
Psa5g1763 710 Pfam WD domain, G-beta repeat 393 429 IPR001680 GO:0005515
Psa5g1763 710 Pfam WD domain, G-beta repeat 352 388 IPR001680 GO:0005515
Psa5g1763 710 Pfam WD domain, G-beta repeat 254 284 IPR001680 GO:0005515
Psa5g1763 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 429 - -
Psa5g1763 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 397 IPR001680 GO:0005515
Psa5g1763 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 429 IPR001680 GO:0005515
Psa5g1763 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 390 - -
Psa5g1763 710 ProSitePatterns Trp-Asp (WD) repeats signature. 550 564 IPR019775 -
Psa5g1763 710 PANTHER WD REPEAT DOMAIN 44 7 710 IPR040324 -
Psa5g1763 710 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 710 - -
Psa5g1763 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 572 IPR001680 GO:0005515
Psa5g1763 710 Gene3D - 236 601 IPR015943 GO:0005515
Psa5g1763 710 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Psa5g1763 710 PRINTS G protein beta WD-40 repeat signature 375 389 IPR020472 -
Psa5g1763 710 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Psa5g1763 710 SUPERFAMILY WD40 repeat-like 246 701 IPR036322 GO:0005515
Psa5g1763 710 SMART WD40_4 482 522 IPR001680 GO:0005515
Psa5g1763 710 SMART WD40_4 350 388 IPR001680 GO:0005515
Psa5g1763 710 SMART WD40_4 246 285 IPR001680 GO:0005515
Psa5g1763 710 SMART WD40_4 523 563 IPR001680 GO:0005515
Psa5g1763 710 SMART WD40_4 391 430 IPR001680 GO:0005515
Psa5g1763 710 SMART WD40_4 432 471 IPR001680 GO:0005515
Psa5g1763 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1763 Psa-Chr5 137074592 137077382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1763 253 411 U-box Gene Family AT2G33340 23.529 3.26e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1763 - - cam:101493225 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1763 5 137074592 137077382 Psa6g0825 6 28994406 28999781 ECH
Psa7g0525 7 35680348 35683697 Psa5g1763 5 137074592 137077382 ECH
Psa5g1763 5 137074592 137077382 Psa5g1763 5 137074592 137077382 ECH