Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1726 ATGGAGGAGAAAGAGAATATTCATCAAGGTGTTGAAGCTAGTATGAGTTTTTTGGAGACATCAAGGAAGAAAAACAACAAGGTGGAGAATAAAAGAAGGTTTAGTGATGAACAGATAAGGTCGCTAGAATGTATATTTGAGTCAGAATCAAAGTTGGAGCCAAGGAAGAAGATGCAGCTTGCGAGAGATCTTGGTTTGCAGCCTAGACAAGTTGCTATATGGTTTCAAAACAGAAGAGCAAGGTGGAAATCAAAGAGGATTGAACAAGAATATAGAAAACTTAAAGTTGAATATGATAATTTAGCTTCTATGTTTCAGTCTCTAAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTGAGTTATATGGTGGAAACTTCTCATGATGGTGGAAGGGAAGCTAAGGAAAATAGCACAGAAGATGGTGGATCAGGAAATGCATATGGAAATTGTATGGCTGAAACAAAGGAAAGGTTTTCAAATGAGGGTTTGGAGGACAGAATGGTAATTTATTCAGATGATCAAAATGAAAGAGGATTAACAAGGACTGAGAAAGTTGATGATAGAGGAAATGAGCTTTTGAGAAATGAAGAAATTCCATTGACAGCACTAGAAAAATGGTACAATGTTGATCCAAGTGTTATCTTAGACCAGACATGCAGTAGTTCTCAATGGTTGGATTTTTGGACTTAG 699 0.3691 MEEKENIHQGVEASMSFLETSRKKNNKVENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKVEYDNLASMFQSLKEEKESLQSEVQKLSYMVETSHDGGREAKENSTEDGGSGNAYGNCMAETKERFSNEGLEDRMVIYSDDQNERGLTRTEKVDDRGNELLRNEEIPLTALEKWYNVDPSVILDQTCSSSQWLDFWT* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1726 232 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Psa5g1726 232 SUPERFAMILY Homeodomain-like 15 85 IPR009057 -
Psa5g1726 232 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 232 IPR045224 GO:0003700
Psa5g1726 232 MobiDBLite consensus disorder prediction 128 147 - -
Psa5g1726 232 CDD homeodomain 31 86 IPR001356 GO:0003677
Psa5g1726 232 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Psa5g1726 232 Gene3D - 29 90 - -
Psa5g1726 232 Pfam Homeobox associated leucine zipper 85 125 IPR003106 GO:0006355|GO:0043565
Psa5g1726 232 Coils Coil 77 125 - -
Psa5g1726 232 Pfam Homeodomain 31 83 IPR001356 GO:0003677
Psa5g1726 232 SMART HOX_1 28 89 IPR001356 GO:0003677
Psa5g1726 232 PRINTS Lambda-repressor HTH signature 56 65 IPR000047 GO:0003677
Psa5g1726 232 PRINTS Lambda-repressor HTH signature 65 81 IPR000047 GO:0003677
Psa5g1726 232 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 232 - -
Psa5g1726 232 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1726 Psa-Chr5 134248132 134250091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1726 22 232 Homeobox Transcription Factor Family AT2G46680 40.851 2.80e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa5g1726 Homeodomain 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1726 K09338 - gmx:100499926 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4994 4 434623910 434625992 Psa5g1726 5 134248132 134250091 ECH
Psa5g1726 5 134248132 134250091 Psa5g1726 5 134248132 134250091 ECH