Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1716 ATGCAGACCAAAAGAAGGAACAACAACAACACTAGTAGTTTTGAAGGATTGTCTAATAAGAAGATGATGATGATGCAGTATCAGCATCCTAATGATAGTTATGGTCCCACAGTATACAACCTGTCTTTTGGTGGTGCTACAACAATCCTCAAATCCCAAGCTGATGTTATGGCGGCTTCATTAGGGAATGCTTTCACAAGCTCTCAATGGAGAGAGCTTGAGATACAAGTTATGATTTACAAGTACTTGCTGGCTTCTCTTCCTGTTCCTTCTTATCTGCTCTCATCTATGATTGATGGTGGTTTCAATACGAGGTTATCATCAAGTAGGAACAGTAGTACTGATCCAGAGGTAGGTAGGTGCAGAAGAACAGACGGTAAAAAATGGAGATGTTCTAGATATGTTGCTCCTAATAACAAGTATTGCGAGCGACATATGCATAGAGGTAGTCACCGTTCAAGAAAGCCTGTGGAACTTCACACCAATGATATTACCCATCATCAAATCAAGAGGACCCCTATTCCAACTACAACAAAATACGCTGGAACTTCATCACAATTTCTTGCTTCCAGTGCTTTTCATCCTTATCTCCAACCACCATTTTCCTTGGATAACAGCAGCTTTGCTGTCAAATTAGCTCCATGTTATGTCCCTTCAAATACGCAACCCAGGGGCTTCGATTGGACGCCGAATGGAGATCCAATATCTCTTGGTGCTTCTAACTCAGGATGGAACTCTCTGATTCACAACAACATACTTGGAATGACCAATGAAAATTCTTATCTCAATATTAACACTGAGTCTCACTATCTGAATCCATTTCCACAATATAATAGTTACGAACTTTCTCAACAAGAAAGACCATTTTCTCTCGTATATAATCCTCTCCAAATTGAGAAACCAAGAGGGTTTAGTTTCATTGATACTTGGTCTAATGCAAACACAGTAGAAAACAATGCCAACAACAACAATGCTTCTGCATCAGTAGCTAAATCAGTAGCTAAATCACCCCTTTCATCGCTTGATCTATCAATGGGAGGTCCACTAGCTGAAGTTCTAAGGCCAAGCAATGTAACTTCCATCAGCGATTCAACAAGCTCAAATCCATCTTCATCTGTCACAACAAACCGTGTCGAATCCATTGGAACTTCAAGAACAGGAACAATGTCATCTCCATCTGGTGTTTTCCATAATAAAACACTCACTTCATTTTCTGATAGCAGTGGTAATAGCAGTCCAACTTGCATCATCAAGACCCAATTCTGA 1266 0.4005 MQTKRRNNNNTSSFEGLSNKKMMMMQYQHPNDSYGPTVYNLSFGGATTILKSQADVMAASLGNAFTSSQWRELEIQVMIYKYLLASLPVPSYLLSSMIDGGFNTRLSSSRNSSTDPEVGRCRRTDGKKWRCSRYVAPNNKYCERHMHRGSHRSRKPVELHTNDITHHQIKRTPIPTTTKYAGTSSQFLASSAFHPYLQPPFSLDNSSFAVKLAPCYVPSNTQPRGFDWTPNGDPISLGASNSGWNSLIHNNILGMTNENSYLNINTESHYLNPFPQYNSYELSQQERPFSLVYNPLQIEKPRGFSFIDTWSNANTVENNANNNNASASVAKSVAKSPLSSLDLSMGGPLAEVLRPSNVTSISDSTSSNPSSSVTTNRVESIGTSRTGTMSSPSGVFHNKTLTSFSDSSGNSSPTCIIKTQF* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1716 421 Pfam WRC 116 158 IPR014977 -
Psa5g1716 421 PANTHER GROWTH-REGULATING FACTOR 7 18 417 - -
Psa5g1716 421 Pfam QLQ 64 94 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa5g1716 421 MobiDBLite consensus disorder prediction 360 394 - -
Psa5g1716 421 ProSiteProfiles WRC domain profile. 115 159 IPR014977 -
Psa5g1716 421 SMART QLQ_2 63 99 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa5g1716 421 ProSiteProfiles QLQ domain profile. 64 99 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa5g1716 421 PANTHER - 18 417 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1716 Psa-Chr5 133290461 133293150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1716 65 161 GRF Transcription Factor Family AT4G37740 52.294 3.35e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Psa5g1716 WRC 2.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1716 - - mtr:MTR_3g092330 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1716 5 133290461 133293150 Psa5g1716 5 133290461 133293150 ECH