Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1715 ATGATCCATATACAACATATTTTGTTTCTATGTTTCCTGCTTCATAATTTTCATGTCATCATTTGCAACAACAAAAACACAGACAGAGATATCCTTCTATCTTTCAAATTTCAATTAACTGACCCAAACAATGTTCTGTCAAATTGGACAGCAGATTCAAATCATTGTAACTGGTATGGTGTCAACTGTTCTAAAGTTGGTGAAAGAGTTCAATCTCTCACCTTATCAGGACTTGGTCTCTCTGGTCAACTACCTTCTAATCTCTCCAACCTCACTTACCTTCATTCACTTGACCTGTCTAAGAACAATTTTCATGGCCAAATTCCTACCCAATTTGGTCACTTCACACTCCTCAATGTCATTCAATTAGCTTTCAACAATCTCTCAGGTTCACTTCCACCACAATTGGGTCGACTGCATAATCTAGTAAGTTTAGACTTTTCTGTCAACAATCTCACAGGTGAAATCCCTTCAACTTTTGGCAATCTCTTTTCTCTTAAGAATCTTTCTCTGGCAAGGAACAAGCTTGTTGGTGAGATTCCAATTGAATTGGGCAATCTCCATAATCTTTCAAGACTTCAACTCTCAGAAAATAATATCACTGGCAGGTTTCCTACTTCGATTTTCTTCAACCTCTCTTCCTTAGTTTTCTTATCCCTCACAAAGAACAATCTATCAGGCGAGTTGCCACAAAATTTTGGCCACGCCTTTCCAAATTTAACCACACTCGCTCTCGCAACCAATAGGTTTGAAGGGGTGATTCCAAATTCTATATCCAATTCATCAAATCTTCAAATTATTGATCTTGCTAACAATAGATTTCATGGGCCAATACCTCTTTTCAACAACCTAAAAAACCTCACTCATTTGACACTTGGTAATAACTATCTCACTTCCACAACATCATTGAATTTAAAGTTCTTTGATTCACTTAGAAACTCCTCTCAGTTGCAAATTCTTATGGTCAACGATAACAACTTGACCGGTGAACTTCCAAATTCTGTTGCCTATCTCTCAGGCAATCTACAACAGTTCTGTGTTTCTAATAATCAGCTAAATGGAAGCATTCCTAAAGGAATGAACAAGTTTCAAAATCTCATATCCTTCTCTTTTGAACAGAATTATTTCACCGGCGAGTTACCAATAGAATTAGGATCACTCAAGAAATTGGAGCAGCTATTGATATACCAAAACAGATTGTCAGGTGAAATTCCAGATATATTTGGCAATTTTACAAATCTGTATATTCTTGCATTAGGAAACAACCAATTCTCAGGTAGAATTCACGCAAGCATTGGACAATGCAAGAGATTGAGTCTTCTTGACTTGGAAATGAATAAGCTTGTTGGTGTCATACCAATGGAGATTTTTCAACTCTCTGGATTGACAACTTTGTACTTACACGGAAACTCTTTGAATGGTTCGCTTCCTCTTGAATTCAAGATGGAGCAGCTAGAGACCATGATTGTTTCAGACAACAAGCTGTCGGGGAACATTCCTAAAATCGAAGTAAACGGCTTGAAGAAACTTAAGATGGCAAGAAATAAATTTAGTGGCTCAATTCCAAATAGTCTAGGAGATTTAGCATCCCTTGTGGTCTTGGATTTATCATCAAACAATCTCACTGGTCCAATTCCTGAGAGTTTAGAAAAGCTTGAGTATATGGTTAGGTTAAATTTGTCTTTCAACAAATTGGAAGGAGAGGTTCCTATGAAAGGTATTTTTATGAACCTAAGCCAGGTTGATCTCCAAGGTAACAACAGATTATGTGGCGTTAACAATCAAGTTATGCACAAGTTGGGAGTCACTTTGTGTGTTGCAGGTAAAAAAAACAAGAGAAACATTTTACTCCCTATCATACTAGGGATTATAGGTGCGGTTGTTTTGTTCGCTTCAATGCTCTATCTGTTGTGGCTGCTAATTTCCTTAAAGAAGAAACATGAGGAGGAGAAAAGAAGTTTGTCATCAACTCCTCTGAAGGGTTTGCCTCAAAATATATCCTATGGTGATATTAGGCTTGCTACAAACAATTTTTCTTCTACAAACTTGGTTGGAAAAGGAGGCTTTGGTTCTGTTTACAAGGGTGTGTTCAACAGCAGCACTTACGAAAGTCAAACCACCATACTTGCTGTTAAAGTTCTTGACCTGCAACAAAGAAAAGCCTCTCAGAGTTTTAGTGCAGAATGCGAAGCTTTGAAAAACATTAGGCATCGGAATCTTGTCAAGGTGATCACTTCTTGCTCTAGCACTGACTACAAGGGGGGTGATTTTAAGGCACTGGTTATGCAATTCATGCCTAATGGTAATTTAGAGATGAATTTATACCCAGAAGATCTCGAGTCAGGATCTTTACTAACCTTGTTGCAAAGGTTGAATATTGCTATTCATGTGGCATCTGCCATGGACTACTTGCACCATGATTGTGATCCACCAATAGTCCACTGTGATCTTAAACCTGCCAATGTCCTGCTAGATGAAGATATGGTTGCACATGTAGCAGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATCCATCAGCGAAACATAGCACCACGCTGGAATTGAAGGGGTCAATTGGCTATATCGCCCCAGAATATGGTCTAGGAGGCAAGGCTTCAACTAGTGGTGATGTGTACAGTTTTGGGATCCTACTGCTAGAGATGTTCATAGCGAAAAAACCAACAGATGAAATGTTCAAAGAAGGATTAAACATGAACAATTTTGTATCCGAGATGGGTGAGAAGCAATTACTGAATATTGTTGATCAAAGGCTTATTAACCATTATGAATATTCAACACAAAATTTCAGCAGTGATAGTCATAGTGGTGGATCCGGCGACATCAGCTATAGTGATGGTAGTAACACATACTGGACTCACAAATCTGAGGAGTGCATAGCTGCTGCAATGAAAATCGGCTTGTCATGTGTAGCACATCATCCCAAAGATAGGTGGACCATGAGAGAGGCCTTATCAAAATTACACGGAATTAAGCAGTTTATACTAGGCTTGTAA 3015 0.3837 MIHIQHILFLCFLLHNFHVIICNNKNTDRDILLSFKFQLTDPNNVLSNWTADSNHCNWYGVNCSKVGERVQSLTLSGLGLSGQLPSNLSNLTYLHSLDLSKNNFHGQIPTQFGHFTLLNVIQLAFNNLSGSLPPQLGRLHNLVSLDFSVNNLTGEIPSTFGNLFSLKNLSLARNKLVGEIPIELGNLHNLSRLQLSENNITGRFPTSIFFNLSSLVFLSLTKNNLSGELPQNFGHAFPNLTTLALATNRFEGVIPNSISNSSNLQIIDLANNRFHGPIPLFNNLKNLTHLTLGNNYLTSTTSLNLKFFDSLRNSSQLQILMVNDNNLTGELPNSVAYLSGNLQQFCVSNNQLNGSIPKGMNKFQNLISFSFEQNYFTGELPIELGSLKKLEQLLIYQNRLSGEIPDIFGNFTNLYILALGNNQFSGRIHASIGQCKRLSLLDLEMNKLVGVIPMEIFQLSGLTTLYLHGNSLNGSLPLEFKMEQLETMIVSDNKLSGNIPKIEVNGLKKLKMARNKFSGSIPNSLGDLASLVVLDLSSNNLTGPIPESLEKLEYMVRLNLSFNKLEGEVPMKGIFMNLSQVDLQGNNRLCGVNNQVMHKLGVTLCVAGKKNKRNILLPIILGIIGAVVLFASMLYLLWLLISLKKKHEEEKRSLSSTPLKGLPQNISYGDIRLATNNFSSTNLVGKGGFGSVYKGVFNSSTYESQTTILAVKVLDLQQRKASQSFSAECEALKNIRHRNLVKVITSCSSTDYKGGDFKALVMQFMPNGNLEMNLYPEDLESGSLLTLLQRLNIAIHVASAMDYLHHDCDPPIVHCDLKPANVLLDEDMVAHVADFGLARFLSQNPSAKHSTTLELKGSIGYIAPEYGLGGKASTSGDVYSFGILLLEMFIAKKPTDEMFKEGLNMNNFVSEMGEKQLLNIVDQRLINHYEYSTQNFSSDSHSGGSGDISYSDGSNTYWTHKSEECIAAAMKIGLSCVAHHPKDRWTMREALSKLHGIKQFILGL* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1715 1004 Gene3D Ribonuclease Inhibitor 24 179 IPR032675 -
Psa5g1715 1004 Gene3D Ribonuclease Inhibitor 180 280 IPR032675 -
Psa5g1715 1004 SMART LRR_typ_2 411 435 IPR003591 -
Psa5g1715 1004 SMART LRR_typ_2 528 552 IPR003591 -
Psa5g1715 1004 SMART LRR_typ_2 284 310 IPR003591 -
Psa5g1715 1004 SMART LRR_typ_2 459 482 IPR003591 -
Psa5g1715 1004 SMART LRR_typ_2 387 410 IPR003591 -
Psa5g1715 1004 SMART LRR_typ_2 139 162 IPR003591 -
Psa5g1715 1004 SMART LRR_typ_2 187 211 IPR003591 -
Psa5g1715 1004 SMART LRR_typ_2 212 235 IPR003591 -
Psa5g1715 1004 SMART LRR_typ_2 91 114 IPR003591 -
Psa5g1715 1004 SMART LRR_typ_2 237 260 IPR003591 -
Psa5g1715 1004 SUPERFAMILY Protein kinase-like (PK-like) 655 994 IPR011009 -
Psa5g1715 1004 PANTHER RECEPTOR-LIKE PROTEIN 55 162 995 - -
Psa5g1715 1004 PANTHER RECEPTOR-LIKE PROTEIN 55 1 89 - -
Psa5g1715 1004 PANTHER RECEPTOR-LIKE PROTEIN 55 80 158 - -
Psa5g1715 1004 Pfam Protein tyrosine and serine/threonine kinase 682 901 IPR001245 GO:0004672|GO:0006468
Psa5g1715 1004 Gene3D Ribonuclease Inhibitor 281 600 IPR032675 -
Psa5g1715 1004 SUPERFAMILY RNI-like 207 496 - -
Psa5g1715 1004 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Psa5g1715 1004 Gene3D Phosphorylase Kinase; domain 1 660 764 - -
Psa5g1715 1004 SUPERFAMILY L domain-like 506 593 - -
Psa5g1715 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Psa5g1715 1004 SUPERFAMILY L domain-like 25 299 - -
Psa5g1715 1004 Gene3D Transferase(Phosphotransferase) domain 1 765 1001 - -
Psa5g1715 1004 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 80 158 - -
Psa5g1715 1004 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 162 995 - -
Psa5g1715 1004 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 89 - -
Psa5g1715 1004 ProSitePatterns Protein kinases ATP-binding region signature. 684 712 IPR017441 GO:0005524
Psa5g1715 1004 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Psa5g1715 1004 SMART serkin_6 678 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1715 1004 ProSiteProfiles Protein kinase domain profile. 678 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1715 Psa-Chr5 133236017 133240026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1715 27 999 Receptor kinase-like Gene Family AT3G47570 40.887 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Psa5g1715 PK_Tyr_Ser-Thr 2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1715 - - mtr:MTR_3g092390 1645.94