Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1707 ATGTCATCCACAAGACAAAACAACAACAATAGGATGATGAGTCCAAACGTTGTTGTTCCCAAACATAGTAGTAAGATTTTTGTTGGAGGATTGGCTTGGAAAACCAAAACAGACACACTGAAAACCTATTTTGATCAGTTCGGTGAGATTCTTGAAGCTGTTGTCATCATTGACAGAAACACCGGAAAATCAAAAGGATATGGCTTTGTTACTTTCAAGGATCCAAATTCTGCCATAATAGCTTGCCAGAATCCTAATCCTGTGATTGATGGAAGAAGAACTAATTGTAATCCTGCATTTCAAAAATCTAATCCATCATCATCAACAGGAAGACAGAAGTTCAATAGTCCTTCATGGAATAATGCACCATTACGATTTTCAAGCTCCTTGAATTATTACAATCAACATGTTCCTCAATATGCATATCCTTATCCAGTTTCCAGGTACTCTTACCCGGGCTATCTTCGTCCACAAGACATTTATGAAATGAACTATCCTAATGTATATGGTGGACCACAATTTCCAGTTCCATTGTATCCACCATATTACCAACCATTTTATGGCTACACTAAGCATTTAGTTCCAACATCATATGTGAAAAAGACGCAATTCCCTGAACCTATTACTACCACTGGAGCAATCACAGAAACAGTAGCTGCAACAAGAGATCAAACATCTTCAGTTTAA 687 0.3726 MSSTRQNNNNRMMSPNVVVPKHSSKIFVGGLAWKTKTDTLKTYFDQFGEILEAVVIIDRNTGKSKGYGFVTFKDPNSAIIACQNPNPVIDGRRTNCNPAFQKSNPSSSTGRQKFNSPSWNNAPLRFSSSLNYYNQHVPQYAYPYPVSRYSYPGYLRPQDIYEMNYPNVYGGPQFPVPLYPPYYQPFYGYTKHLVPTSYVKKTQFPEPITTTGAITETVAATRDQTSSV* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1707 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Psa5g1707 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 84 IPR000504 GO:0003723
Psa5g1707 228 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 6 220 - -
Psa5g1707 228 Gene3D - 1 115 IPR012677 -
Psa5g1707 228 SUPERFAMILY RNA-binding domain, RBD 21 111 IPR035979 GO:0003676
Psa5g1707 228 SMART rrm1_1 25 97 IPR000504 GO:0003723
Psa5g1707 228 CDD RRM_RBM24_RBM38_like 24 99 - -
Psa5g1707 228 PANTHER BOULE-RELATED 6 220 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1707 Psa-Chr5 132650355 132652034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1707 26 117 C2H2 Transcription Factor Family AT2G19380 40.217 3.80e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1707 - - cam:101508568 284.263