Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1704 ATGGCTGTTGCTGATAATGTTAGTGCCAATTTGGACAACAACAACACCAACAACGTTGTATCATCTGACTCAACTGAGGTGGAGAAATCGAAACCTAGGAGCGATCAGGATGTGACCATCAACAACAACGCTGTGTTCAACCATCAACTTCCGAATGGTGGTAATTATAGCTTCAAGGCTCATCAATTGGGTCAGATGCATGCTAACGGGGCTCAGAATCAGCAGTTTGTGATGAACAATGATGGGTATGTGATGAACGGTGAGAACGAGGGCGAGAGTTTCAAGCGCGAAATGAGGGATTTGGAGGAATTGTTGTCGAAACTGAATCCCATGGCCGAGGAATTTGTGCCACCATCGCTAACCAATAATCACGGATACTTACCTGGAGCTGCTGCTGGGTTTGGTTACCCTAACAATTATATACTTCTCAATAACTATGCTAATGCTAACGGCCAAACTAACCGAAGGAGGAAGACTGGCTATAGTACTAATGGAAAGCGAAGAGTGAATCATAAAGTAGATATGGAGAAACGAGAAGAGATGATTAGGAGGACCGTTTATGTGTCTGACATTGATCAACAGGTAACTGAAGAGCAGCTGGCATCTCTCTTTCTTAATTGCGGCCAGGTTGTTGACTGCCGTGTTTGCGGAGATCCCAACTCTATTCTCCGTTTTGCCTTCATTGAGTTTACCGATGAAGAAAGTGCAAGAGCTGCTGTAAGCCTTTCTGGAACTATGCTGGGATATTACCCGTTGAGAGTGCTGCCTTCCAAAACTGCCATTGCACCTGTCAATCCGACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCTAGAACAATTTACTGCACAAACATCGACAAAAAGCTGACTCAAGCAGATGTGAAACACTTCTTTGAATCTATCTGTGGAGAGGTTCAACGACTGAGGCTTCTTGGGGATTACCATCATTCAACTCGGATTGCATTTGTCGAGTTCACAGTGGCTGACAGTGCAATTGCCGCCCTAAGCTGCAGTGGCGTGATTTTGGGTGCTCTGCCTATAAGGGTGAGTCCGTCAAAGACTCCAGTCCGTGCTCGTTCTCCTCGTAGTCCATGA 1104 0.4565 MAVADNVSANLDNNNTNNVVSSDSTEVEKSKPRSDQDVTINNNAVFNHQLPNGGNYSFKAHQLGQMHANGAQNQQFVMNNDGYVMNGENEGESFKREMRDLEELLSKLNPMAEEFVPPSLTNNHGYLPGAAAGFGYPNNYILLNNYANANGQTNRRRKTGYSTNGKRRVNHKVDMEKREEMIRRTVYVSDIDQQVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVADSAIAALSCSGVILGALPIRVSPSKTPVRARSPRSP* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1704 367 MobiDBLite consensus disorder prediction 7 25 - -
Psa5g1704 367 SUPERFAMILY RNA-binding domain, RBD 271 362 IPR035979 GO:0003676
Psa5g1704 367 Pfam Ataxin-2 C-terminal region 105 119 IPR009818 -
Psa5g1704 367 Gene3D - 145 261 IPR012677 -
Psa5g1704 367 Gene3D - 268 364 IPR012677 -
Psa5g1704 367 CDD RRM2_CID8_like 277 358 IPR034825 -
Psa5g1704 367 MobiDBLite consensus disorder prediction 1 37 - -
Psa5g1704 367 Coils Coil 84 104 - -
Psa5g1704 367 CDD RRM1_CID8_like 182 261 IPR034823 -
Psa5g1704 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 357 IPR000504 GO:0003723
Psa5g1704 367 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 366 - -
Psa5g1704 367 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 366 - -
Psa5g1704 367 SUPERFAMILY RNA-binding domain, RBD 173 261 IPR035979 GO:0003676
Psa5g1704 367 SMART rrm1_1 185 255 IPR000504 GO:0003723
Psa5g1704 367 SMART rrm1_1 282 353 IPR000504 GO:0003723
Psa5g1704 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 259 IPR000504 GO:0003723
Psa5g1704 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 345 IPR000504 GO:0003723
Psa5g1704 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 249 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1704 Psa-Chr5 132548570 132552888 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1704 183 345 Eukaryotic Initiation Factors Gene Family AT1G34140 25.150 1.20e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1704 - - gmx:106794116 559.681