Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1700 ATGGCTGTCGCTGAGAATGTTGGAACCAAAATCGATGCTTCCAGTGAGAATTTGGACAACAGTGTGGTTTCATCGGACTCAACTGAGGTTGAGAAATCGAAACCCAAAAGCGATCAGAATCTGAACGGCATCAACAACACTAACGGTGGTGTGTTCAATCATCAACAACAAGACAGTGTTGTCCCCGTTCCTGCCGCTGCTATGACTGTGCCGAATGGAAATCATGGCTTCAAGAGTCATCAGATGGGTCAGATGCATGGGAATGGGGTTCAGAATCAGCTTTTGGTGGTGAACAATGGGGGTGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAAGAGTTGTTGTCCAAGTTGAATCCCATGGCTGAGGAGTTTGTTCCTCCGTCACTGATAACTAATTATCAGGGATATTTAGCTGCCGGACCTAATGCTGGGTTTGGTTACCCTAACAATTTTGTGCTTCAGAACAATTCGGGGAATGCTAACGGACAGATTAACAGGAGGAGAAAGAATGGATATAATAATGCGAAGCGGAGGGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTCACTGAAGAGCAGCTGGCAGCTATCTTTCTTAACTGCGGTCAGGTTGTTGATTGCCGTGTATGTGGGGATCCCAATTCTGTTCTTCGGTTTGCCTTCGTCGAGTTTACAGATGAAGTCGGTGCTAGGACTGCTTTGAACCTGTCTGGAACCATGCTCGGGTTTTACCCATTGAGAGTGCTCCCTTCGAAGACTGCCATTGCACCTGTTAATCCAACATATCTGCCTAGGTCTGAAGATGAAAGAGAGATGTGCACTAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTACAGCAGATGTCAAACACTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCCTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCTTTTGTGGAGTTCACCGTGGCTGACAGTGCAATTGCAGCACTGAGCTGTAGTGGCGTGGTTTTGGGCGCACTTGCTATAAGGGTGAGTCCATCCAAGACACCAGTCCGCCCTCGCGCAACCCGTCCTCCCATGCACTGA 1143 0.4646 MAVAENVGTKIDASSENLDNSVVSSDSTEVEKSKPKSDQNLNGINNTNGGVFNHQQQDSVVPVPAAAMTVPNGNHGFKSHQMGQMHGNGVQNQLLVVNNGGESFKREMRDLEELLSKLNPMAEEFVPPSLITNYQGYLAAGPNAGFGYPNNFVLQNNSGNANGQINRRRKNGYNNAKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAAIFLNCGQVVDCRVCGDPNSVLRFAFVEFTDEVGARTALNLSGTMLGFYPLRVLPSKTAIAPVNPTYLPRSEDEREMCTRTIYCTNIDKKLTTADVKHFFESLCGEVQRLRLLGDYHHSTRIAFVEFTVADSAIAALSCSGVVLGALAIRVSPSKTPVRPRATRPPMH* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1700 380 CDD RRM1_CID8_like 193 272 IPR034823 -
Psa5g1700 380 Gene3D - 285 364 IPR012677 -
Psa5g1700 380 Pfam Ataxin-2 C-terminal region 115 129 IPR009818 -
Psa5g1700 380 MobiDBLite consensus disorder prediction 1 42 - -
Psa5g1700 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 259 IPR000504 GO:0003723
Psa5g1700 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 356 IPR000504 GO:0003723
Psa5g1700 380 SUPERFAMILY RNA-binding domain, RBD 169 272 IPR035979 GO:0003676
Psa5g1700 380 MobiDBLite consensus disorder prediction 10 28 - -
Psa5g1700 380 CDD RRM2_CID8_like 288 369 IPR034825 -
Psa5g1700 380 Gene3D - 155 272 IPR012677 -
Psa5g1700 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 368 IPR000504 GO:0003723
Psa5g1700 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 270 IPR000504 GO:0003723
Psa5g1700 380 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 380 - -
Psa5g1700 380 SUPERFAMILY RNA-binding domain, RBD 282 375 IPR035979 GO:0003676
Psa5g1700 380 SMART rrm1_1 196 266 IPR000504 GO:0003723
Psa5g1700 380 SMART rrm1_1 293 364 IPR000504 GO:0003723
Psa5g1700 380 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1700 Psa-Chr5 132405264 132412582 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1700 194 363 Eukaryotic Initiation Factors Gene Family AT1G34140 26.437 2.39e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1700 - - gmx:106794116 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1700 5 132405264 132412582 Psa5g1700 5 132405264 132412582 ECH