Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1696 ATGAGTAGTCGCTTTTCTCGCACAATCTATGTTGGGAACCTGCCCTCTGATGTAAGGGAATCAGAAATTGATGATCTATTTTACAAGTATGGCCGCATAATGGAAATTGAATTGAAAGTTCCTCCTCGCCCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCGGAAGATGCAATTCGGGGTAGGGATGGTTACAACTTTGATGGTTGTCGATTAAGGGTTGAGCTTGCCCATGGAGGTAGAGGGCCATCATCAAGTGATCGACGGGGGTATGGTGGCAGTGGTGGCGGAGGTGGTGCAGGAGGAGGTGGTGGTGGTGGTGCTGGTGGGGGCCGATTTGGTGTCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCTTCCTGGCAAGATTTGAAGGATCATATGAGAAAAGCTGGTGATGTTTGTTTTGCTGAAGTTTCCCGTGATAGTGAAGGGACTTTTGGCCTTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTGGATGACACCGAGTTTAAAAATCCTTGGGCAAGATCATATATTCGGGTGAAGAAGTATGAGAGCAGTCGTTCCAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGAAGTCCAAAAAGGGCTAAAAGTAGATCTTTGGAGCGATCTGTGTCCAGGTCACGATCTATTTCTAGATCCAGATCAGCATCACCAATCAAGGCTTCAAGGCCACGATCACGATCACGTTCACCCTCCCGTTCCGTATCTCCAAGATCACCGCCCAAGGTTCTGTCAGGGGATGTTTGA 825 0.4739 MSSRFSRTIYVGNLPSDVRESEIDDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGSGGGGGAGGGGGGGAGGGRFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFKNPWARSYIRVKKYESSRSRSRSRSPSRSRSPKRAKSRSLERSVSRSRSISRSRSASPIKASRPRSRSRSPSRSVSPRSPPKVLSGDV* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1696 274 MobiDBLite consensus disorder prediction 81 110 - -
Psa5g1696 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 202 IPR000504 GO:0003723
Psa5g1696 274 SMART rrm1_1 8 78 IPR000504 GO:0003723
Psa5g1696 274 SMART rrm1_1 125 198 IPR000504 GO:0003723
Psa5g1696 274 Gene3D - 2 121 IPR012677 -
Psa5g1696 274 CDD RRM1_SF2_plant_like 8 79 - -
Psa5g1696 274 SUPERFAMILY RNA-binding domain, RBD 6 192 IPR035979 GO:0003676
Psa5g1696 274 CDD RRM2_SF2_plant_like 124 199 - -
Psa5g1696 274 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 260 - -
Psa5g1696 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Psa5g1696 274 MobiDBLite consensus disorder prediction 199 274 - -
Psa5g1696 274 MobiDBLite consensus disorder prediction 220 234 - -
Psa5g1696 274 Gene3D - 124 201 IPR012677 -
Psa5g1696 274 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 260 - -
Psa5g1696 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 188 IPR000504 GO:0003723
Psa5g1696 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Psa5g1696 274 MobiDBLite consensus disorder prediction 235 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1696 Psa-Chr5 131970852 131975958 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1696 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 31.579 2.95e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1696 K12890 - gmx:100800653 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1696 5 131970852 131975958 Psa5g1696 5 131970852 131975958 ECH