Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1682 ATGGGTGAAATTGTGGCGAGTGGCGAGAGATTGGTGAGAGTTGAAGAAGAGGAAGAGAGTGGAACTGAGACTAGAGGAGGTGGTGAAGTGAAAGGGCTTTTGAGATGGGAGAAGTTTTTGCCAAAGATGGTTTTGAGAGTGCTTTTGGTTGAAGCTGATGATTGTACTAGACAGATTATAACAGCACTTCTGAGAAAATGCAATTATAAAGTTGCCGCTGTTGCCGATGGATTGAAGGCATGGGAGATACTCAAGGGAAGACCGCGGAATTTCGATCTTATACTTACAGAAGTCGATTTGCCATCGGTATCTGGCTATGCACTTCTCTCGTTAATTATGGAGCATGATACTTGCAAAACCATCCCTGTTATAATGATGTCGTCGCAAGATTCAGTTAGTACGGTATACAAATGCATGTTGAGAGGTGCAGCTGATTATCTTGTTAAGCCGATTCGGATAAATGAACTAAGGAATCTGTGGCAGCATGTTTGGAGAAGACAATCGTCAACCGCCACCGCTGGCATAAATGGTCCCCAAGATGAAATTGATGCACTGCAGAAAGTTGAAGCCACTGCTGAAAACAATGCTGCTAGTAATCGTTCTAGCGGTGACGCTGCTTGCATTCAAAGAAATAAGGACTTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACAAAGCCAAACATGGAAGCTGAGAGTGGCCTGGTTGATAACATGCAAGAATTTACTCAGCTGAAATGTGCTGAAGCATGTCCAAGTGAATTAAAGACACAAGAATTTGACATTCGTTTAGGCCAGACATTGATCACGCAGGACAGTCACGCTGGAGGATTAAGCATGGCTAACCACAAAAATGGAGAGACAAGCACAAATAATGGCAAGGACGTTGATGATCAAGAGCATTTTAGGATTGCTAGCACCAGTGGTGAGGTTCATGACAATCACTATGTTCAAATTAACTCTACTAAGGAAGCTATTGACTTGATTGGAGCATTTCGTACGCATCCGAATTGCAGTCTCAAAAAGCCATCCATTGATTGGACAGACAAGCTTGACAATTCTCCACAGTTGGATCTTTCTCTTAGAAGCTCTCATCCAAGTAACATTGAGAAGGAACTCACTGAAGAAAGGAACACCCTTATGCATTCTAATGCTTCCGCTTTCAAACGGTATACTAACAGACAATTGCAAGCGTCACCTGCAGTAGTAGTTAACTTCTCTGATCAACAAAGAGAACAAAAAACAAATAATGATAACCATAACTCAGATAGTTCAATACCAAGTATGCAAAAATGTAATATATCTCCAGCTACAGCCCAATCAAAAGAATCCGAACTCGCCACTTCACAGTCCCAGCAAGGGCATTCTCTCCCGATTCCTGTAAAAGGCGTAAGGTTCAATGATCTTTGTGTGGCCTATGGTTCAACGCTCCCACAAGGGTTTTGTACACAATCGGGTCCACCATCCATGCCAGGTTCAGTTGTGTTTCTCGAACAGAATTTTCAAGCAGATGCATTTTATCAGCCAAATGTTAAAGAAAATAATTCAGACGAACCCCGTTGTCCAAATGGAAATAGCACCCCAAACCAAAATGTTTACACACAGGAACACAGGTCAGAACATGCAGAGGATCAAAGACTTATCTCGCCAACAACTGATCAAAGTGTATCGAGTAGTTTGTGTAATAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGTAATTGTGGAAGTAGCAGCAATGTTGAAAATGTTGCCGCTTTCAGAACATCAGCAGTTTCCGATGGTAAGAATGAAGACCTCACAAACGGTGGATATTCACATTCACATCGATCTATGCTAAGAGAAGCAGCTCTAAACAAGTTCCGATTGAAACGAAAAGAGAGATGTTATGAAAAGAAGGTTCGATATGAGAGCAGGAAAAAACTAGCAGAGCAGCGTCCTCGAGTTAAAGGACAATTTGTTCGCCAAGTGAATCCTGATTCTCTTTCTGGAGAAAAAGATTGCTGA 2019 0.4185 MGEIVASGERLVRVEEEEESGTETRGGGEVKGLLRWEKFLPKMVLRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEILKGRPRNFDLILTEVDLPSVSGYALLSLIMEHDTCKTIPVIMMSSQDSVSTVYKCMLRGAADYLVKPIRINELRNLWQHVWRRQSSTATAGINGPQDEIDALQKVEATAENNAASNRSSGDAACIQRNKDLIEKGSDAQSSCTKPNMEAESGLVDNMQEFTQLKCAEACPSELKTQEFDIRLGQTLITQDSHAGGLSMANHKNGETSTNNGKDVDDQEHFRIASTSGEVHDNHYVQINSTKEAIDLIGAFRTHPNCSLKKPSIDWTDKLDNSPQLDLSLRSSHPSNIEKELTEERNTLMHSNASAFKRYTNRQLQASPAVVVNFSDQQREQKTNNDNHNSDSSIPSMQKCNISPATAQSKESELATSQSQQGHSLPIPVKGVRFNDLCVAYGSTLPQGFCTQSGPPSMPGSVVFLEQNFQADAFYQPNVKENNSDEPRCPNGNSTPNQNVYTQEHRSEHAEDQRLISPTTDQSVSSSLCNNGNASHLNSIGYGSNCGSSSNVENVAAFRTSAVSDGKNEDLTNGGYSHSHRSMLREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVNPDSLSGEKDC* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1682 672 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 30 649 - -
Psa5g1682 672 SMART REC_2 45 160 IPR001789 GO:0000160
Psa5g1682 672 Pfam CCT motif 618 660 IPR010402 GO:0005515
Psa5g1682 672 MobiDBLite consensus disorder prediction 644 672 - -
Psa5g1682 672 ProSiteProfiles Response regulatory domain profile. 46 164 IPR001789 GO:0000160
Psa5g1682 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 649 IPR045279 GO:0009736
Psa5g1682 672 Gene3D - 43 280 - -
Psa5g1682 672 MobiDBLite consensus disorder prediction 408 429 - -
Psa5g1682 672 MobiDBLite consensus disorder prediction 437 456 - -
Psa5g1682 672 ProSiteProfiles CCT domain profile. 618 660 IPR010402 GO:0005515
Psa5g1682 672 MobiDBLite consensus disorder prediction 536 560 - -
Psa5g1682 672 CDD psREC_PRR 47 150 - -
Psa5g1682 672 Pfam Response regulator receiver domain 47 158 IPR001789 GO:0000160
Psa5g1682 672 SUPERFAMILY CheY-like 45 169 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1682 Psa-Chr5 131131454 131135493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1682 600 661 Response Regulator Gene Family AT5G24470 74.242 5.48e-21 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Psa5g1682 Response_reg 3.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1682 K12130 - gmx:100777119 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1682 5 131131454 131135493 Psa5g1682 5 131131454 131135493 ECH