Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1672 ATGCAGCTAGCAAGTGCTTCTGTTCTTCCAATGGTCTTAAAAACAGCTCTTGAACTTGATCTCTTAGAAATCATAGCTAAATCTGGTCCTGGTGCTCATCTTTCGCCGCTAGATATTGCTTCTCAGCTTCCAACAAAGAACCCTGATGCACCTGTTATGTTGGACCGTATCTTGCGGCTATTGGCTTGTTACAATATTCTTACTTGTACGTTAAGGACTCTAGAAGATGGAAAGGTTCAGAGACTCTATGGTTTAGCTACTGTTGCTAAGTACTTGGTTAAGAATGAAGATGGTGTTTCTATTTCTGCTCTTAATCTCATGAATCAGGATAAAGTACTCATGGAAAGCTGGTACCACCTTAAAGATGCTGTCCTTGATGGGGGCATTCCATTCAACAAAGCTTATGGAATGACAGCCTTTGAATACCATGGAACAGATCCAAGGTTTAACAAAGTTTTCAACAAGGGAATGTCTGATCACTCTACCATCACAATGAAGAAAATTCTTGAGACCTACACAGGTTTTCAAGGCCTTAAATCTCTTGTTGATGTAGGTGGTGGCACCGGAGCTGTAATTAACACCATTGTCTCAAAATATCCCACCATTAAAGGGATTAATTTTGATTTGCCTCATGTCATTGAAGACGCTCCTTCTTATCCCGGAGTGGAGCATGTTGGCGGAGACATGTTTCTCAGTGTTCCAAAGGCTGATGCTATTTTTATGAAGTGGATTTGTCATGATTGGAGTGATGAGCACTGCTTGAAATTTTTGAAGAACTGTTATGAGGCACTTCCTGAAAATGGAAAAGTGATTGTGGCAGAATGCATTCTTCCAGTGGCACCAGACACAAGCTTGGCAACAAAAGGTGTGGTGCACATTGATGTGATCATGTTGGCTCATAATCCAGGTGGGAAAGAGAGAACACAGAAAGAGTTTGAGGATCTTGCTAAAGGTGCTGGATTCCAAGGTTTCAAAGTCCATTGTAATGCTTTCAACACATACATCATGGAATTTCTTAAGGTTTAA 1026 0.4084 MQLASASVLPMVLKTALELDLLEIIAKSGPGAHLSPLDIASQLPTKNPDAPVMLDRILRLLACYNILTCTLRTLEDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFQGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFLSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPENGKVIVAECILPVAPDTSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLKV* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1672 341 Pfam O-methyltransferase domain 117 322 IPR001077 GO:0008171
Psa5g1672 341 PANTHER BNAA10G07270D PROTEIN 1 340 - -
Psa5g1672 341 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 340 IPR016461 GO:0008168
Psa5g1672 341 Gene3D Vaccinia Virus protein VP39 93 340 IPR029063 -
Psa5g1672 341 Gene3D - 1 92 IPR036388 -
Psa5g1672 341 CDD AdoMet_MTases 181 272 - -
Psa5g1672 341 SUPERFAMILY "Winged helix" DNA-binding domain 1 96 IPR036390 -
Psa5g1672 341 PIRSF O-mtase 1 340 IPR016461 GO:0008168
Psa5g1672 341 PANTHER O-METHYLTRANSFERASE 1 340 IPR016461 GO:0008168
Psa5g1672 341 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 98 338 IPR029063 -
Psa5g1672 341 Pfam Dimerisation domain 11 62 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1672 Psa-Chr5 130586569 130589427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1672 1 340 Monolignol Biosynthesis Gene Families AT5G54160 77.941 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1672 K13066 - gmx:100780100 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1672 5 130586569 130589427 Psa5g1672 5 130586569 130589427 ECH