Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1653 ATGAAGACCATTCTATCTTCCGAGACCATGAACATCCCTGATGGCGTTAGCATCAAGGTTAACGCCAAGGTGATCGAGGTCGAAGGTCCACGAGGTAAACTTGTTCGTGACTTCAAGCATCTTAACCTTGATTTTGATCTCATCACCGATGAGAACGGAAAGAAGAAGCTCAAGATCGACGCGTGGTTTGGTTCCCGGAAAACCTCCGCCGCCATCAGAACCGCTCTCAGCCACGTCGAGAATCTCATCACTGGTGTCACCAAGGGTTTCCGCTACAAGATGAGGTTTGTATATGCTCATTTTCCAATCAACGCTAGCATTACAAATGACAACAAGTCTATTGAGATCCGTAACTTTCTCGGTGAAAAGAAGGTGAGGAAAGTGGATTTGCTTGATGGAGTTTCAATTATTCGATCTGAGAAGGTGAAGGATGAGGTTGTTTTGGATGGAAATGACATTGAGCTTGTTTCTCGATCATGTGCTCTTATTAACCAGAAATGCCATGTTAAAAAGAAGGATATCAGGAAGTTTCTTGATGGTATTTATGTTAGTGAGAAGGGTGCTGTAGTTGTTGAAGAATAG 582 0.433 MKTILSSETMNIPDGVSIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDENGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYAHFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGAVVVEE* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1653 193 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa5g1653 193 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa5g1653 193 Gene3D - 90 193 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa5g1653 193 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa5g1653 193 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Psa5g1653 193 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa5g1653 193 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa5g1653 193 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa5g1653 193 PANTHER 60S RIBOSOMAL PROTEIN L9-1 1 193 - -
Psa5g1653 193 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 193 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1653 Psa-Chr5 129620625 129622340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1653 1 193 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 86.598 3.76e-122 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1653 K02940 - gmx:100500079 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1653 5 129620625 129622340 Psa5g1653 5 129620625 129622340 ECH