Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1646 ATGGAAGAAGAAGAAGATGATCATGATGAGATGAAGAAGAACGTGGTCAGAGCTTTGCCATTCTTTAAACTGTTGAGCTATGCTGACTATGTGGATTGGATTCTTATGGGTTTGGGAACTTTAGGTTCTATTGTGCATGGCATGGCACTTCCTGTTGGTTATTTGTTGTTAGGAAAAGCTCTTAATGCTTTTGGTAACAATATTCATGACATTGATGCTATGGTTCCTGCTCTTAAAAAGGTTGTTCCGTACGTGTGGTACATGGCCATCGCCACATTTCCTGCTGGGGTACTTGAGATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATCGCGACTAAGATTAGCATATCTAAAAGCAGTCCTAAGCCAAGAGATAGGAGCTTTTGATACAGAATTAACAAGTGGAAAAGTCATCACTGGAATAAGCAAGCACATGAGTGTTATACAAGATGCCATTGGTGAAAAGTTGGGTCACTTTACCTCTAGCTGCGCAACTTTCTTCGCTGGAATTGTGATCGCCGCGATATCCTGCTGGGAAGTAGCACTTCTATGTTTAGTGGTTGTCCCTCTTATTCTCATAATTGGAGCAAGTTACACTAAAAAAATGAACAGAATCTCAACTACCAAATTGTTTTACCATTCTGAAGCCACGTCTATGATAGAACAGACCATATCACAAATAAAAACAGTATATGCTTTTGTTGGAGAGGGTTTGGCAGTCAAATCCTTCACAGAGAACATGGATAAACAGTATGTCATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGAATGTTTCAAACTGTGAGTTTTTGTTCTTGGTCTCTGATTATATGGGTTGGAGCCGTTGTTGTCAGAGCCGGGAGAGCAAAGGGAGGAGATATAATAGCTGCAGTAATGAGTATTCTTTTTGGTGCCATATCTATCACTTATGCAGCACCAGACATGCAAATATTCAATCAGGCAAAAGCTGCGGGGTATGAGGTCTTTCAAGTGATCCAAAGAAAGCCACTTATACATAATGAATCAAAAGGGAAGATTCCTACGAAGATTAGCGGTTACATTGAGCTTCGAGATGTTCACTTTTCATACCCGTCACGGCCAGAGAAATCTATCCTTCAAGGACTGTCATTGTCCATACCAGCAGGAAAGACAGTAGCTCTAGTTGGTAGCAGCGGATGCGGAAAGAGCACTGTCATTTCCCTGATAACTAGGTTTTATGACCCCACTAGAGGAGAAATTTTTATTGACAGTCACAATATCAAGGACCTTGATCTGCAGTTTCTTCGAAGTAATATAGGGGCTGTATACCAAGAACCATCGCTCTTTACGGGCACTATTAAGGATAATTTGAAACTGGGAAAAATGGATGCAGATGACGAAGAGATTCAAAAGGCAGCAATGATGTCTAATGCACACTCTTTCATATCACAGCTTCCTAATCAGTACCTAACTGAGGTAGGACAAAGGGGCGTTCAAGTATCAGGAGGTCAGAAGCAGAGAATTGCAATTGCAAGAGCCATTCTGAAAAATCCTCCTATTCTTTTGCTTGATGAGGCCACTAGTGCCCTTGATTCAGAATCGGAAAAGCTGGTTCAAGAAGCACTTGACACAGCGATAGAGGGAAGGACTGTCATCTTGATTGCACACAGGCTTTCAACAGTTGTAAATGCAGATATGATTGCTGTCGTGGAGAATGGACAAATCATAGAGATAGGAACACACCAGAGTTTGTTAGACACGAGCAAATTTTATAGTACATTATTCAGCATGCAGAACCTTGAATCAGTTCCTGAACTAAGAACTACAACTTCCAAGAATAAAAGTGCCCGCCAAGTAGGCACTATTGATGAAACTAGACCATTGCCGGAGACACAGAGAGAGGTCCAAAGAGATCTTACAGACCATTCTGTACTGGAGGAACAAAACAAGACGAGCTTAAGAGAAGAAAATATATTTTTCAGAATATGGTTTGATTTAAAAAAGAAGGAGCTGGTGAAGATTGCTATTGGCTCGTTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCGTTTTTCGGTTTCTACATCATCACCATCGGAGTAGCATACTTTGAAGAAGATGCAAAACGAAAAGTTGGAATGTTCTCAGCAATCTTCTCTGGAATAGGGTTGCTTTCATTATTTAGCCACACCTTCCAGCATTACTTCTTTGGAGTGGTTGGAGAAAAGGCCATGGCAAATTTCAGACGTGCTTTGTATTCAGGTGTGCTTCGTAATGAAGTAGGCTGGTTTGACAAACCTGACAACACTGTCGGTTCGTTAACTTCACGCATCATCAGCGATACTGCCATGGTCAAAATCATAATTGCTGATCGCATGTCCGTCATTGTGCAATGTGTTTCCTCCATACTTATAGCAACATCTGTTAGCATGTATGTCAACTGGAGAATGGGTTTGGTGGCATGGGCTGTGATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCCGCCAAAGGATTTTCAGGCGACTACTCGGCTACACATTCAGACCTTGTCGCTCTTGCATCTGAGTCCACAACCAATATAAGGACTATAGCATCATTTTGTCATGAAGAACAAGTACTGAAGAAAGCCAAAACATATCTGGACATTCCAAAGAAAAAGTACAGAAAAGAAAGTATCAAATATGGGATCATCCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACACGCTGTTGCTTTGTGGTACACTACAATTCTGGTCGACAGACGGCAAGCCTCTTTTGAAAATGGAATAAGAGCATACCAAATATTTTCTCTTACAGTTCCTTCTATCACAGAATTATACACACTGATCCCAACTGTCATCACTGCCATCAATATGCTAACCCCAGCATTCAAAACCCTTGACCGTAAAACTGAAATCGAACCAGATATACCGGACAACTCAGAACCCGAGAGGATCGAAGGAACTGTCGAATTTGAAAATGTAAATTTCAAGTACCCTTTAAGACCTGCAGTCACTGTTCTTGACAATTTCAGTTTAAAAATTGAAGCTGGATCTAAGGTGGCTTTTGTAGGACCGAGCGGCGCTGGAAAATCGTCAGTTTTGGCCCTTTTACTAAGATTTTATGATCCAGTGGAAGGAAAAGTACTAATTGATGGGAAAGACTTGAAGGAATATAACCTAAGATGGTTAAGGACACAAATAGGACTGGTACAACAAGAGCCACTGCTTTTTAACTGCTCAATTCGAGACAATATTTGCTATGGAAATAATTCGGCTTCTGAAAGTGAAATTGTGGAGGTTTCTAGAGAAGCAAATATACATGAATTTGTGAGTAATCTACCAAATGGATATAACACTGTTGTTGGAGAGAAAGGTTGCCAGCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCAAGAACCTTACTAAAGAAGCCAGCAATATTACTCCTTGATGAAGCAACGAGTGCCCTCGATGCTGAGTCTGAAAGAACTATAGTAAATGCTATTAAAGCAATGAATCTGAAGGAAGCAACTGGTTTGTGTTCGAGAACCACCCAGATCACAATAGCTCATAGACTTTCCACAGTAAAAAACTCGGATACCATAATCGTCATGGAAAAAGGTAGAATTGTAGAGACAGGCTCCCACTCAACTCTAATTGCAGTGGATGCAGGACTTTATTCAAGATTATTCAGACTACAGAGCTTCGACGAGACCTCATAG 3735 0.4123 MEEEEDDHDEMKKNVVRALPFFKLLSYADYVDWILMGLGTLGSIVHGMALPVGYLLLGKALNAFGNNIHDIDAMVPALKKVVPYVWYMAIATFPAGVLEIGCWMYASERQLSRLRLAYLKAVLSQEIGAFDTELTSGKVITGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIAAISCWEVALLCLVVVPLILIIGASYTKKMNRISTTKLFYHSEATSMIEQTISQIKTVYAFVGEGLAVKSFTENMDKQYVISKGEALVKGVGTGMFQTVSFCSWSLIIWVGAVVVRAGRAKGGDIIAAVMSILFGAISITYAAPDMQIFNQAKAAGYEVFQVIQRKPLIHNESKGKIPTKISGYIELRDVHFSYPSRPEKSILQGLSLSIPAGKTVALVGSSGCGKSTVISLITRFYDPTRGEIFIDSHNIKDLDLQFLRSNIGAVYQEPSLFTGTIKDNLKLGKMDADDEEIQKAAMMSNAHSFISQLPNQYLTEVGQRGVQVSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALDTAIEGRTVILIAHRLSTVVNADMIAVVENGQIIEIGTHQSLLDTSKFYSTLFSMQNLESVPELRTTTSKNKSARQVGTIDETRPLPETQREVQRDLTDHSVLEEQNKTSLREENIFFRIWFDLKKKELVKIAIGSFAAAFSGISKPFFGFYIITIGVAYFEEDAKRKVGMFSAIFSGIGLLSLFSHTFQHYFFGVVGEKAMANFRRALYSGVLRNEVGWFDKPDNTVGSLTSRIISDTAMVKIIIADRMSVIVQCVSSILIATSVSMYVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDYSATHSDLVALASESTTNIRTIASFCHEEQVLKKAKTYLDIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQASFENGIRAYQIFSLTVPSITELYTLIPTVITAINMLTPAFKTLDRKTEIEPDIPDNSEPERIEGTVEFENVNFKYPLRPAVTVLDNFSLKIEAGSKVAFVGPSGAGKSSVLALLLRFYDPVEGKVLIDGKDLKEYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNNSASESEIVEVSREANIHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVNAIKAMNLKEATGLCSRTTQITIAHRLSTVKNSDTIIVMEKGRIVETGSHSTLIAVDAGLYSRLFRLQSFDETS* 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1646 1244 CDD ABC_MTABC3_MDL1_MDL2 359 596 - -
Psa5g1646 1244 PANTHER BRACHYTIC2 3 1240 - -
Psa5g1646 1244 Gene3D - 982 1243 IPR027417 -
Psa5g1646 1244 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524
Psa5g1646 1244 Gene3D ABC transporter type 1, transmembrane domain 23 955 IPR036640 GO:0005524|GO:0016021
Psa5g1646 1244 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Psa5g1646 1244 SUPERFAMILY ABC transporter transmembrane region 665 977 IPR036640 GO:0005524|GO:0016021
Psa5g1646 1244 Pfam ABC transporter transmembrane region 37 310 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g1646 1244 Pfam ABC transporter transmembrane region 674 931 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g1646 1244 CDD ABC_MTABC3_MDL1_MDL2 992 1238 - -
Psa5g1646 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 985 1238 IPR027417 -
Psa5g1646 1244 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 992 1236 IPR003439 GO:0005524
Psa5g1646 1244 ProSitePatterns ABC transporters family signature. 1131 1145 IPR017871 GO:0005524
Psa5g1646 1244 SUPERFAMILY ABC transporter transmembrane region 23 341 IPR036640 GO:0005524|GO:0016021
Psa5g1646 1244 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 673 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g1646 1244 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g1646 1244 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 975 - -
Psa5g1646 1244 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 333 - -
Psa5g1646 1244 PANTHER ABC TRANSPORTER B FAMILY 3 1240 - -
Psa5g1646 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 596 IPR027417 -
Psa5g1646 1244 Pfam ABC transporter 1010 1159 IPR003439 GO:0005524
Psa5g1646 1244 Pfam ABC transporter 377 526 IPR003439 GO:0005524
Psa5g1646 1244 SMART AAA_5 386 578 IPR003593 -
Psa5g1646 1244 SMART AAA_5 1019 1213 IPR003593 -
Psa5g1646 1244 Gene3D - 349 597 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1646 Psa-Chr5 128245051 128249853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1646 9 1243 Calmodulin-binding Proteins AT2G36910 40.521 0.0 958
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1646 K05658 - zju:107414909 1794.63