Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1644 GCTGCGATACCAGAGAAACTAAAACAACTGATTACGAATAGCACTGTTCACACTCTTCGCGACACATGCTCCTCTCTTCATCACTTCTTTCTTCATTTCGAACCATTTCACCAGATAGTGGCTGAACTTGCAGACCCTAGCCATGCTCTATGCGGCAAGAGCAAAGAAACCGCGTTGAAATATAAGCAGCTTGGTAACCAATGCTTCTCCAGTGCTGATTATGCCAAGGCATTGGATTATTATACCCAGGCATTGCGCAGGGCTCCTTTTGAGGTTGGTGCAATTGAAAATAATCTGATTGCAACATTGTATATTAATCGAGCTACTGTATTGCATAAAATGAATCTTTTAGTAGAGTGTTTGCGAGATTGCAATCGAGCTCTTCAGATATGTCCAAGCTATTCAAAGGCATGGTATAGGAGAGGAAAGGCGAATGTCTCATTGGGAAATAATAGAGATGCGATCTGTGACCTAAATATAGCTAAGAGTGTTGAATCGTCCACAGGTGGAAAGAAACAAATAGAAAGTGAGGTGAAAATTATTTTAGATCAATCCACGAGTGCAAATATATCAGTAAAGCCGCGGCAGAAGGAAAATAGCTTGAATACAGTGGGTGAGATGCCTCAAATAAAGCTGCAATCTGTCTCCATGCCTGATAAAGGAAGAGGCACAGTGCCATCATATGATGTTTCACCAGGTTCGTTGGTTCATGCTGAAGAACCTTATGCTACAATAATATTAAAGCAATGCCGGGAAACTCATTGCCATTATTGCTTGAACGACCTACCTGCTGATAGAGTTCCTTGTATATCATGCTCAATACCATTGTATTGCTCCCGCCAATGCCAGATAAAGGCAGGCGGGCAAACGTTCAGGATTTCCACAGACGATAACATTCTTAAAAACTTACCCTGTGATCTTGGAGAATATGCTGCTGAAGTGATTCAATATAATGATTATGAACTAAAGATTGATGATGTTACTGAACATCAACATGAATGTCAAGGGGTACATTGGCCTGCTGTATTGCCCTCTGAGATAGTTTTGGCTGGCAGAGTTCTAGCGAAGTTTTTGTCGAAGAGCTCGTCTGGAGATATCACAATTTTTGTGGAAAAGTTGGAGCTTTCTCATTGCTACGAATGTATGCCATTTGAAAGTAAATTGGATTCACATATATACGCCATTGTACTGTTATATTGTCTTAAACACTCTTATGGAACTATGTTTTCCATCGACGGAATCTCTATATCACAGGTTGTCATAGTTATTTCTCAGATTAAAGTGAATTGTATGACCGTTGTTCGTTTAAAATCAATAGACGCTCATGGACTATCAGATCAATGCGGAGGATTTCCATTTCATTCCAGTGTACATTTAACTAGTAATGTGGAACAGGTCAGAGTGGGCAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTCTTTCACGAACACTCTATTTACGTACAACAAAAGTTGTAGCAGCTGGGTCTCAGCTGGAATTGTCTTATGGTCCGCAGGTTGGTTTGTGGGATTGTAAAGATCGCCAAAGTTTTCTCCAAGATGAATACGGATTTCATTGTCAATGTACTGGTTGTTCAGAAGTCAATCTATCTGACATTGTCCTCAATGCTTTTCGTTGTATCTACCCAAATTGTTCTGGCGCAGTGTTGGAAAACAGAGTACTTGAATGTGAAAAGCAGAAAATCGAACACTTCCCTATTGCTGACAAAGATATCAAGAATGATGACATCTATGAAGTATGTCTTCATGCATTTAACCAAAATGATGCCTTTAATCATATTCAACCTGGAAACTGTTTAAAATGTGGTTCTTACTGTGATCTGAAGTCTTCACGTGCCACGGTTGATAAAGCCTTAATATGCATAAAAAGGCTGCAGGATGCAATATTGTCAAAAGAAATTTCAAATACTTCCATTTCAGACGCTTTGAGATCTCTTCATTTGCTAAGATCAAATTTGCATGCATACAATAAGGTTATTGCAGAGGCTGAAGACAACCTTGCCCAAGCTTTTTGTTTAGTGGGAGAATTACAATTATCTGCGGATCATTGTAAAGCATCTATTCAGATTCTGGAAAAACTATATGATCCTGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTTCATCTGTCCAACTTTCCTTGGGTGACGATAGTGCTGTCGACAGCATTAGTCGAATAGGTGCTATCTTCTCACGTTATTATGGACTTCACGCAGATTTGGTCTTTCCTTACCTTCAGTACCTCAGGAGAGAAATTTAG 2319 0.3928 AAIPEKLKQLITNSTVHTLRDTCSSLHHFFLHFEPFHQIVAELADPSHALCGKSKETALKYKQLGNQCFSSADYAKALDYYTQALRRAPFEVGAIENNLIATLYINRATVLHKMNLLVECLRDCNRALQICPSYSKAWYRRGKANVSLGNNRDAICDLNIAKSVESSTGGKKQIESEVKIILDQSTSANISVKPRQKENSLNTVGEMPQIKLQSVSMPDKGRGTVPSYDVSPGSLVHAEEPYATIILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSRQCQIKAGGQTFRISTDDNILKNLPCDLGEYAAEVIQYNDYELKIDDVTEHQHECQGVHWPAVLPSEIVLAGRVLAKFLSKSSSGDITIFVEKLELSHCYECMPFESKLDSHIYAIVLLYCLKHSYGTMFSIDGISISQVVIVISQIKVNCMTVVRLKSIDAHGLSDQCGGFPFHSSVHLTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFLSRTLYLRTTKVVAAGSQLELSYGPQVGLWDCKDRQSFLQDEYGFHCQCTGCSEVNLSDIVLNAFRCIYPNCSGAVLENRVLECEKQKIEHFPIADKDIKNDDIYEVCLHAFNQNDAFNHIQPGNCLKCGSYCDLKSSRATVDKALICIKRLQDAILSKEISNTSISDALRSLHLLRSNLHAYNKVIAEAEDNLAQAFCLVGELQLSADHCKASIQILEKLYDPDDIVIAYELVKLSSVQLSLGDDSAVDSISRIGAIFSRYYGLHADLVFPYLQYLRREI* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1644 772 Gene3D Tetratricopeptide repeat domain 520 769 IPR011990 GO:0005515
Psa5g1644 772 Pfam SET domain 468 515 IPR001214 GO:0005515
Psa5g1644 772 Gene3D Tetratricopeptide repeat domain 33 196 IPR011990 GO:0005515
Psa5g1644 772 ProSiteProfiles TPR repeat profile. 58 91 IPR019734 GO:0005515
Psa5g1644 772 SUPERFAMILY TPR-like 54 161 IPR011990 GO:0005515
Psa5g1644 772 SMART tpr_5 135 168 IPR019734 GO:0005515
Psa5g1644 772 SMART tpr_5 679 712 IPR019734 GO:0005515
Psa5g1644 772 SMART tpr_5 58 91 IPR019734 GO:0005515
Psa5g1644 772 SMART tpr_5 101 134 IPR019734 GO:0005515
Psa5g1644 772 Gene3D SET domain 225 253 IPR046341 -
Psa5g1644 772 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 2 771 - -
Psa5g1644 772 Gene3D - 254 286 - -
Psa5g1644 772 SUPERFAMILY SET domain 216 540 IPR046341 -
Psa5g1644 772 Coils Coil 664 684 - -
Psa5g1644 772 Gene3D SET domain 410 514 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1644 Psa-Chr5 128158398 128165536 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa5g1644 SET 9.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1644 K24634 - gmx:100783548 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1644 5 128158398 128165536 Psa5g1644 5 128158398 128165536 ECH