Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1630 ATGATCATGATTCCTTGTACGAACCTTCGATTACGGGCTAATTCTGCTTCTGGATACGACGAAGTTGTGATCGGAGACGGTGGAGAGGAAGAGAATAATTCTTCTTCTTCTCGGAGTTGGGTTGAGGAGTTCAGCTGTAATGAGGTGATTGCTGGCCGTGGTATGGTGTTGTCAGAGGAGGCTCGCCGTGCTATAGCTGCGGAGAGGGTTCCTCTTAGGATTGCGAAGTTTGTTGAACAGATTCTTCCTTTTTCCCTCTTGTTGGTGGTTGTTTTGATTCGCCAGCATTTGCAAGGTTTCTTTGTCACAATCAGTGTATCAGCTGTAATGTTCAAGTCAAATGATATTGTTAAGAAACAGACTGCTCTAAAGGGAGATCAGAAAGTCCCTATTCTTCTTGGTGTTGCTTTTTCTTTCATGCTGTATGTGACATGCATTTACTGGTGGTATCGGCATGATGATATTTTATTTCCACTAGCCTTGTTTCCACCAAAAGCAACACCACCTTTCTGGCATGCAATATTCATCATTTTGGTTAATGACATATTGGTGCGGCAAGCGACAATGGCTTTCAAGTGTTTGTTGCTGCTTTACTACAAAAATGGAAGATGCCATAACTTCCGTCGACAGGCTCAAATGTTAACTTTGGTTGAGTACACACTGCTGCTGTATCGTGCTTTCTTGCCAACACCAGTTTGGTACCGATTTTTCCTTAACAAGGACTTTGGAAGTCTTTTCTCATCACTGATCACAGGATTGTATCTAACATTCAAGCTTACATCTGCAGTTGAGAAGGTCCAATGCTTCATTCGTGCTTTAAAAGCGTTGTCAAGAAAGGAAGTTCATTATGGGCTTTATGCCACAACAGAACAGGTAAGTGCTGCTGGTGATCTTTGTGCTATATGCCAAGAGAAGATGCATGATCCTATCCTGTTGTGCTGCAAACACATGTTCTGCGAGGAGTGTGTATCCGAATGGTTTGAGAGAGAATGGACTTGCCCGTTATGCAGGACGTTGGTAAAACCTGCTGATCTGCGGACCTTCGGAGATGGATCAACAAGTTTGTTTTTTCAGCTGTTTTGA 1083 0.4303 MIMIPCTNLRLRANSASGYDEVVIGDGGEEENNSSSSRSWVEEFSCNEVIAGRGMVLSEEARRAIAAERVPLRIAKFVEQILPFSLLLVVVLIRQHLQGFFVTISVSAVMFKSNDIVKKQTALKGDQKVPILLGVAFSFMLYVTCIYWWYRHDDILFPLALFPPKATPPFWHAIFIILVNDILVRQATMAFKCLLLLYYKNGRCHNFRRQAQMLTLVEYTLLLYRAFLPTPVWYRFFLNKDFGSLFSSLITGLYLTFKLTSAVEKVQCFIRALKALSRKEVHYGLYATTEQVSAAGDLCAICQEKMHDPILLCCKHMFCEECVSEWFEREWTCPLCRTLVKPADLRTFGDGSTSLFFQLF* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1630 360 ProSiteProfiles Zinc finger RING-type profile. 299 337 IPR001841 -
Psa5g1630 360 ProSitePatterns Zinc finger RING-type signature. 314 323 IPR017907 -
Psa5g1630 360 CDD RING-HC_RNFT1_like 298 337 - -
Psa5g1630 360 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 73 360 - -
Psa5g1630 360 SMART ring_2 299 336 IPR001841 -
Psa5g1630 360 Pfam Zinc finger, C3HC4 type (RING finger) 297 340 - -
Psa5g1630 360 SUPERFAMILY RING/U-box 289 342 - -
Psa5g1630 360 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 73 360 IPR044235 GO:0061630|GO:1904294
Psa5g1630 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 347 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1630 Psa-Chr5 127460991 127465787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1630 73 360 C3H Transcription Factor Family AT5G01960 75.347 2.04e-169 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1630 - K22379 gmx:100784614 523.472