Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1627 ATGGGGAGGAGACCTGCTAGGTGTTATAGACAGATCAAGAACAAGCCATACCCAAAGTCACGTTTCTGTCGTGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTCGGCATGAAGAAGAAAGGTGTTGACGAGTTTCCATTCTGCGTCCATCTTGTTAGTTGGGAAAAGGAAAATGTATCAAGTGAGGCATTGGAAGCTGCTAGGATTGCCTGCAACAAGTACATGTCGAAATTCGCCGGAAAGGATGCATTCCACTTGAGGGTCAGAGTGCATCCGTTCCATGTTCTTAGGATCAACAAGATGCTCTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGAGCTTTTGGAAAGCCACTTGGAACATGTGCTAGGGTTGCTATTGGTCAGGTGCTTCTTTCTGTCCGGTGCAAGGACAACAATAGCCATCATGCACAGGAGGCACTACGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATCATCAGCAGGAAGTGGGGTTTCACCAAGTTTAACCGAGTCGATTACCTCAAGTACAAATCAGAGAACAGGATTTTGCCTGATGGTGTGAATGCTAAGCTTCTTGGATGCCATGGACCATTGGCGAATCGTCAACCTGGAAGAGCTTTTATTGATGCTAGTACTCCTACTTCTTAG 672 0.4628 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIISRKWGFTKFNRVDYLKYKSENRILPDGVNAKLLGCHGPLANRQPGRAFIDASTPTS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1627 223 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Psa5g1627 223 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Psa5g1627 223 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Psa5g1627 223 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Psa5g1627 223 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Psa5g1627 223 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 219 - -
Psa5g1627 223 Gene3D Ribosomal protein L10e/L16 1 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
Psa5g1627 223 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Psa5g1627 223 PANTHER 60S RIBOSOMAL PROTEIN L10 1 219 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1627 Psa-Chr5 127361505 127362880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1627 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.727 1.07e-146 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1627 K02866 - pvy:116105818 444.121