Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1617 ATGGAGAAAGAAAAGGAGAAAGAGTTGGTGGAATTGTATGAATCCGCCAAGAAAGCAGCGGATGCGTCTACCTCCGACGATAGCCCACACGAAGAAAGCCGATGTATTGATGCGCTCGAGCAGCTCAAGAAATTTCCTGTCAATTATAAAATTCTCGTCAATACCCAGGTGGGAAAACATCTTAAAAGTCTTACCAAGCACCCCAGGCAGAAAATTCGGGCTTTTGCTGTTGACTTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGTAAAAATAAATCTGGGCCGTCAGATTCTAAGGTTGAGTCAACAAATGGAGAGAGAGCTAAAGCTGGGAGGTTGCAAAAGAGTCCTTCGGTGAAGGTTGAGAAAGGAGAAAGTGTCAAAGTGGAAAAAGTTAATGGGAATGGTACATCAAAGCTGAGCTCTGGAAATGTAAAGGCACAAAATGTGGATGTCAAAATTGAGAAAACTGATCGTACTTCAAGCATCAAGGTGGAAAAGATAGCCAAAGAGGAATCACATGTTTCTGTAGCAAAGAAATTTTCATCCAGCTCTGCCGCTCCTCCAAAGCTGAAGACTATGATCAAATCTAATGATTCAGCACGAGACAAAATAAGGGAACTTCTTGGAGATGCTTTATCCAAGGTCTTTGAAGAGGCAGATGAAGATATGAAGGATGAAGTAAATGCATGTGACCCAATTCGTGTTGCAGTGACAGTGGAGTCTCTATTATTTGAAAAGTGGGGTCCTTCAAATGGAGCCCAAAAGGTCAAGTATAGGTCATTAATGTTTAATCTTAAGGATCAGAATAACCCAGATTTCCGAAGAAAAGTTCTGCTCGGTATTGTTGAGCCACACCGGCTAATCGAGATGACTTCAGCAGAAATGGCCAGTGAACAAAGGAAGCAGCAGATTGAGAAACTCGAGAAGAAGGCGTTGTTTGAATGTGAGCGTGGAGGTCAACCAAAAGCTACTACTGATCAATTTAAGTGTGGTAGGTGTGGTCAAAGGAAAACCACCTATTACCAAATGCAGACTCGTAGTGCTGATGAACCTATGACAACATATGTCACTTGTGTTAACTGCAACAACCGTTGGAAGTTTTGTTAG 1119 0.4164 MEKEKEKELVELYESAKKAADASTSDDSPHEESRCIDALEQLKKFPVNYKILVNTQVGKHLKSLTKHPRQKIRAFAVDLIEIWKGIIIKETSKNKSGPSDSKVESTNGERAKAGRLQKSPSVKVEKGESVKVEKVNGNGTSKLSSGNVKAQNVDVKIEKTDRTSSIKVEKIAKEESHVSVAKKFSSSSAAPPKLKTMIKSNDSARDKIRELLGDALSKVFEEADEDMKDEVNACDPIRVAVTVESLLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGIVEPHRLIEMTSAEMASEQRKQQIEKLEKKALFECERGGQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNRWKFC* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1617 372 CDD Zn-ribbon_TFIIS 325 371 - -
Psa5g1617 372 ProSiteProfiles TFIIS central domain profile. 204 327 IPR003618 GO:0006351
Psa5g1617 372 ProSitePatterns Zinc finger TFIIS-type signature. 334 369 IPR001222 GO:0003676|GO:0006351|GO:0008270
Psa5g1617 372 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 6 372 - -
Psa5g1617 372 MobiDBLite consensus disorder prediction 93 127 - -
Psa5g1617 372 Gene3D - 159 300 IPR036575 GO:0006351
Psa5g1617 372 SMART mid_6 202 310 IPR003618 GO:0006351
Psa5g1617 372 SMART TFS2_5 12 89 IPR003617 GO:0005634
Psa5g1617 372 Pfam Transcription factor S-II (TFIIS) 332 370 IPR001222 GO:0003676|GO:0006351|GO:0008270
Psa5g1617 372 Gene3D - 301 372 - -
Psa5g1617 372 ProSiteProfiles TFIIS N-terminal domain profile. 11 90 IPR017923 -
Psa5g1617 372 Coils Coil 294 314 - -
Psa5g1617 372 SUPERFAMILY Elongation factor TFIIS domain 2 191 302 IPR036575 GO:0006351
Psa5g1617 372 SUPERFAMILY Zinc beta-ribbon 312 370 - -
Psa5g1617 372 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 6 372 - -
Psa5g1617 372 Pfam TFIIS helical bundle-like domain 38 87 IPR017923 -
Psa5g1617 372 TIGRFAM TFSII: transcription elongation factor S-II 16 372 IPR006289 GO:0003676|GO:0005634|GO:0006368
Psa5g1617 372 SMART Cys4_2 332 371 IPR001222 GO:0003676|GO:0006351|GO:0008270
Psa5g1617 372 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 29 102 IPR035441 -
Psa5g1617 372 PIRSF TFIIS 3 372 IPR035100 -
Psa5g1617 372 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 101 IPR035441 -
Psa5g1617 372 Pfam Transcription factor S-II (TFIIS), central domain 201 318 IPR003618 GO:0006351
Psa5g1617 372 ProSiteProfiles Zinc finger TFIIS-type profile. 330 370 IPR001222 GO:0003676|GO:0006351|GO:0008270
Psa5g1617 372 CDD TFIIS_I 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1617 Psa-Chr5 126687424 126691907 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Psa5g1617 TFIIS_M 5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1617 K03145 - gmx:100811982 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1617 5 126687424 126691907 Psa5g1617 5 126687424 126691907 ECH