Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1615 ATGGCGATCCGTTTACATCTACGCCTTCACCGTCTTTTGCTCGACGCGGATTCAACTTCAACAAGTGACATGAATAGGCCAAGAGAAACTTTCACAGCCACAGGTGATTCAAATTTCGACACCACCATGGTGTTTATCTTAGCAGCTTTACTTTGTGCACTTATTTTTGCATTAGGACTTAACTCAATTGTAAGGTGTGCTCTAAGATGTAGTCACAGATATGCTTTCGAGACACCAGATGAAACAATTGCTCGTTTAGCTTCAAAGGGTTTGAAGAAGAGTGCTTTGCGTAAGATCCCTATAGCTGTTTATGGTTCAGGAGGTAGTACTAGTTTTGCAGCTACAGATTGTCCAATTTGTCTTGGAGAGTTTGTGGATGGAGAGAAAGTTCGAGTTTTGCCAAAATGTAACCATGGATTTCATGTAAGGTGTATAGATAGATGGCTGCTTTCACACTCCTCTTGTCCTACTTGTAGACAGTCTTTGATTGAGTATCCAAATCCAACTAGTTCTTCTGAAGGTTCATCTTTAGTTGTGAATGTTGTTGCTGTGGCTGCAGGAACCGCAAACCAGCGGCTTTAA 582 0.4158 MAIRLHLRLHRLLLDADSTSTSDMNRPRETFTATGDSNFDTTMVFILAALLCALIFALGLNSIVRCALRCSHRYAFETPDETIARLASKGLKKSALRKIPIAVYGSGGSTSFAATDCPICLGEFVDGEKVRVLPKCNHGFHVRCIDRWLLSHSSCPTCRQSLIEYPNPTSSSEGSSLVVNVVAVAAGTANQRL* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1615 193 SUPERFAMILY RING/U-box 116 167 - -
Psa5g1615 193 CDD RING-H2_PA-TM-RING 116 159 - -
Psa5g1615 193 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Psa5g1615 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 164 IPR013083 -
Psa5g1615 193 Pfam Ring finger domain 116 159 IPR001841 -
Psa5g1615 193 SMART ring_2 117 158 IPR001841 -
Psa5g1615 193 PANTHER RING-H2 FINGER PROTEIN ATL74 10 173 - -
Psa5g1615 193 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 10 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1615 Psa-Chr5 126664295 126667311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1615 9 182 C3H Transcription Factor Family AT3G10910 52.432 3.08e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1615 - K19040 mtr:MTR_3g094000 280.411