Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1613 ATGGCTTTTCTAGCAACCTCATTCATTTTTATTCCTTTCTTTCTTCTTAGCTTATGCCTTAAAGGCACTTTTGCTGATTATGGAGGTGGATGGGAAAGTGCCCATGCCACATTTTATGGTGGTGGAGATGCTTCAGGCACAATGGGAGGGGCTTGTGGTTATGGAAATTTGTATAGTCAAGGCTATGGAACCAACACTGCTGCACTAAGCACTGCTCTATTCAACAATGGATTGAGTTGTGGGTCTTGCTATGAGATGAGATGTGACAATGACCCTAAATGGTGTCTTCCGGGAAGCATATTGGTCACTGCCACAAACTTTTGTCCACCAAACTTTGCAGAGTCTAATTCCAATGGTGGATGGTGTAACCCTCCTCTTCAGCACTTTGATCTTGCTGAGCCTGCTTTCTTACAAATTGCTCAATACAAAGCTGGAATTGTTCCTATTTCCTTCAGAAGAGTCCCCTGTGTAAAGAAAGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTTTTGGTAACAAACGTGGGTGGAGCTGGAGATGTTCATTCTGTATCCATCAAAGGATCAAAAACTGGGTGGCAAACTATGTCAAGAAACTGGGGACAAAATTGGCAAAGCAACAACTACCTTAACGGTCAAAGCCTTTCTTTCCAAGTTACTACAAGTGATGGCAGGGTTGTCACTAGCAACAATGTTGTGCCTAGTAATTGGCAATTTGGACAGACATTTACAGGGGCACAATACTAG 762 0.4252 MAFLATSFIFIPFFLLSLCLKGTFADYGGGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDNDPKWCLPGSILVTATNFCPPNFAESNSNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPISFRRVPCVKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQTMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRVVTSNNVVPSNWQFGQTFTGAQY* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1613 253 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Psa5g1613 253 Gene3D - 160 253 IPR036749 -
Psa5g1613 253 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Psa5g1613 253 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Psa5g1613 253 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Psa5g1613 253 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Psa5g1613 253 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Psa5g1613 253 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Psa5g1613 253 Gene3D - 20 156 IPR036908 -
Psa5g1613 253 PANTHER EXPANSIN 14 253 - -
Psa5g1613 253 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Psa5g1613 253 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Psa5g1613 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Psa5g1613 253 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Psa5g1613 253 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Psa5g1613 253 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Psa5g1613 253 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Psa5g1613 253 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Psa5g1613 253 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Psa5g1613 253 SMART dpbb_1 66 151 IPR007112 -
Psa5g1613 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Psa5g1613 253 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Psa5g1613 253 PANTHER EXPANSIN-A15 14 253 IPR002963 GO:0009664
Psa5g1613 253 Pfam Lytic transglycolase 66 150 IPR009009 -
Psa5g1613 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Psa5g1613 253 SUPERFAMILY Barwin-like endoglucanases 10 179 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1613 Psa-Chr5 126578636 126580448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1613 2 253 Expansin Gene Family AT2G40610 77.075 4.80e-144 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1613 - K20628 gmx:100807183 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1613 5 126578636 126580448 Psa5g1613 5 126578636 126580448 ECH