Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1604 ATGTCCTCCGATGACATCAATCTCGGTCCTGATCAGAGAATCGAAAACGGCCTCACTTCCCCCCTCGTCTTCCAAGACGATGCTTTACGCTTCAACTGCGATGGTGCACCACAGCGGCAGGTCGGCGATCCGGTTCTTAAACCCCGGGAAGTCGGCGGTTTCATCGACGACAAGATGTTCACTGTAAATCGCGATCGCTTTTTCACCTCCCAGGGTACCGAGTTCCGCCGTAACGTTTTTGCTGATCGCTCCGACCACAGGGATGCTCCAGATGTACTGAACTGGAGCGCGGGAACTCCCAGTAGCGATGATTCGGACGGAGAAGACGATGAAGATGACGATGGAGATGAAGGTGACGATGGTGGCGAAGGGGTCATTGTAGTAGACAGACTCGTCAGTATTGGTGACGGGAGCAACCGGAGTTCAAATGCAATCATTGACGTTAACAATAACAACGGTGGTGGTGTTGTAATTGGAAAATCTCAGCATCATTCCCCTTATGTTTCTGGTAGAGAGATGTTGGGAAAGGACGGAGAGATTGTACAGTTGGTGCATAACCATGGGAGTGGTACTGTTGGTGAAGGTCATCAGCGAGAAAGATTAGGTAAAACTCAGAACTCTGCAACTGTTGCTGAAACTGATTGTGAGGAGTATTATTCCCATTATCTTCAAGGTGCAGAAGGGTCACCTTCTGTACAGAAAGTTATGGTGGATGACAATGGTTGTGGGTTTAGTGGAAGAAGGGATGCTGTGTATTCAAGCGAGTCAGGGGAGTCATTGAGGGCAATTCTTTCAGATCCTGTTAGTGGGACTCTTATGGATGATGCAATGATATTACCTTGTGGACATTCTTTTGGCGGAGGTGGAGTACAGCATGTTATTAGAATGAAAGCTTGTTGTACTTGCTCTCAACCCACACTGGAGGAATCAATATCTCCGAATCTTTCACTCCAAGCTGCCGTGCAGGCGTACCGTCGGGAAGAGGAATCACAATTTTACCGGTCATCTAAAAGAAGAAGAGAAAGATTTGATCAGGGTGGTTTAGGAGAGTGTGCTGTTTTTGAACCATCAAGGAGCAGAGGTGTTCAATTTCCATTTGCTGTGACGGACAGGGTTATCATAAAGGGGAACAAAAGGACACCACAACGCTTTGTTGGAAGGGAAGCTATTGTAACAACACAATGCCTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAATTGCAGTATCGCTCCCTTGCGAAGGTTTCTGATGATCCTTCAAAACTTGTCTCCAGCAACAAGGGACCTAATTGGCTTCAGATCAGCCGCACACCATCATAA 1338 0.4716 MSSDDINLGPDQRIENGLTSPLVFQDDALRFNCDGAPQRQVGDPVLKPREVGGFIDDKMFTVNRDRFFTSQGTEFRRNVFADRSDHRDAPDVLNWSAGTPSSDDSDGEDDEDDDGDEGDDGGEGVIVVDRLVSIGDGSNRSSNAIIDVNNNNGGGVVIGKSQHHSPYVSGREMLGKDGEIVQLVHNHGSGTVGEGHQRERLGKTQNSATVAETDCEEYYSHYLQGAEGSPSVQKVMVDDNGCGFSGRRDAVYSSESGESLRAILSDPVSGTLMDDAMILPCGHSFGGGGVQHVIRMKACCTCSQPTLEESISPNLSLQAAVQAYRREEESQFYRSSKRRRERFDQGGLGECAVFEPSRSRGVQFPFAVTDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKLVSSNKGPNWLQISRTPS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1604 445 MobiDBLite consensus disorder prediction 103 122 - -
Psa5g1604 445 SUPERFAMILY RING/U-box 258 330 - -
Psa5g1604 445 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 91 438 - -
Psa5g1604 445 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 91 438 - -
Psa5g1604 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 329 IPR013083 -
Psa5g1604 445 ProSiteProfiles U-box domain profile. 259 331 IPR003613 GO:0004842|GO:0016567
Psa5g1604 445 MobiDBLite consensus disorder prediction 90 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1604 Psa-Chr5 126086444 126091596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1604 207 438 Plant U-box Gene Family AT5G05230 60.669 5.87e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1604 - - adu:107470194 598.201