Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1602 ATGACTGATGTTGTTTCTTCCAAGAAGAAGCTGCTCGTAAAGGAGCTTCTTCAGGGTCAAGAATATGCTACTCAGCTAAAGTTTCTGCTTAAGAATCGTGTTGGTTTAGGTTCTGATGGGTCTGCTTCGGCTAAGGAATTGGTGGATAGTTTGCTGAGATCTTTCTCTGAGACTATTTCTGTGATGACTTCTGAAGCTTGTGATTTTTCTGTGAATAACTCAGAGGAAAATGGTTCATTGGTGTCAGCTTCATGGAATGATGATATGAAATCTGAAGATTCAAGTGAGAGTAAGAAGAGATTGTTGCCTAACACGAAAGATCGAAGAGGTTCCTACAAAAGAAGGAGGAAAATTCATGTTTACCCTAAATTATTGAGCAGAAAGACTGATGAGACAAGAACCATAGTCTCTACAACAACTGGTGATATTCATTCCTGGAGAAAGTACGGACAGAAGGAAATCCTCAATTCTCAATTTCCTAGGAGCTACTTCAGGTGTACCCGGAAGCATGATCAAGGTTGCAAAGCAACCAAACAGGTACAATTGATACAAGAGGATCCAGAAACATACCAAATTACCTACATTGGGTTTCACACTTGCAATGCCACTCTACATACTCCACAAATGGTCACATTTTCTGCGGATACCAATTGGGACACATTTCATGTGAATTCTCAACCTCTCTCAATGGAAGTTCTAACAAATTATATTCAACAGGATTCCCCTATTATTACCTCAGAAAGACCAATTGTGAAACAAGAATATCCAAACAATGACGACAGTACTACTACTCCGAGGAGTGATCTCACCGACGATTTATTCGATGCCAACTTGTGGTCTGATTTTAAGGATTTTGAACTATCCAAGCCAGATACTAGTGTGTATTCATGTAGTGAATCTCAAAATCTTGAAATTGATTTTGGGGTGTTTTCTGATTTCAGCAATGATTTAGTGTATTTTGATGAAAGGCATTTGCTATAA 981 0.3863 MTDVVSSKKKLLVKELLQGQEYATQLKFLLKNRVGLGSDGSASAKELVDSLLRSFSETISVMTSEACDFSVNNSEENGSLVSASWNDDMKSEDSSESKKRLLPNTKDRRGSYKRRRKIHVYPKLLSRKTDETRTIVSTTTGDIHSWRKYGQKEILNSQFPRSYFRCTRKHDQGCKATKQVQLIQEDPETYQITYIGFHTCNATLHTPQMVTFSADTNWDTFHVNSQPLSMEVLTNYIQQDSPIITSERPIVKQEYPNNDDSTTTPRSDLTDDLFDANLWSDFKDFELSKPDTSVYSCSESQNLEIDFGVFSDFSNDLVYFDERHLL* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1602 326 MobiDBLite consensus disorder prediction 82 114 - -
Psa5g1602 326 MobiDBLite consensus disorder prediction 89 108 - -
Psa5g1602 326 Gene3D WRKY domain 126 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g1602 326 ProSiteProfiles WRKY domain profile. 142 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g1602 326 Pfam WRKY DNA -binding domain 142 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g1602 326 SUPERFAMILY WRKY DNA-binding domain 137 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g1602 326 SMART WRKY_cls 140 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g1602 326 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 6 298 IPR044810 GO:0003700
Psa5g1602 326 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 6 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1602 Psa-Chr5 125961420 125963591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1602 3 242 WRKY Transcription Factor Family AT3G56400 41.494 1.14e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa5g1602 WRKY 3.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1602 - - gmx:100170683 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1602 5 125961420 125963591 Psa5g1602 5 125961420 125963591 ECH
Psa2g1459 2 109642093 109646998 Psa5g1602 5 125961420 125963591 PCT