Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1562 ATGATGTCAACCACAAATATTGTTAACCACCACAGCTTGTTTGATGAAGAACAACAAGATCATGAGATCCCTATGCAGATGGGGTTCAATATTCCTTTCCCTCCAAACATGACTTTACCTCCTTTAGGTAATTGCCATGATCAATCTTTGAAAGGTGTAAGTGCGATAATAACTCCTGAAGCTGCAACATTCGCTGAAGCTTTACTAGCAACAGCTGTTCAAAAACCACGAGAATTCCAAGATCTTGCTTCTGGTTTTGGTTGTGGAGGAGGCCAAAACCTTGACTTAAACAGATCCAGAATGAATTCATGGGCATGGGGAGAAGTAAGTGATTGCTGGATAGGTAAAAGAAGTAATGGAGGAGATGATCATAATCATATAGGGGTTTCAGCAGCCATAAAGATGAAGAAAATGAAAGGAAGAAGGAAGGTGAGGGAACCTAGGTTTTGCTTCAAAACAATGAGTGATATAGATGTGTTGGATGATGGTTACAAATGGAGGAAGTACGGACAGAAAGTGGTCAAGAACACTCAGCATCCCAGAAGCTACTACCGTTGCACGCAAGACAGTTGTCGAGTAAAGAAACGTGTAGAGCGATTGGCTGAGGATCCAAGAATGGTGATAACCACATATGAAGGAAGACATGCTCACTCTCCATCAAACGAGCTCGAAGAATCACAAACTCATTCTGAACTTGCAAATTTCTTCTGGTAG 714 0.4146 MMSTTNIVNHHSLFDEEQQDHEIPMQMGFNIPFPPNMTLPPLGNCHDQSLKGVSAIITPEAATFAEALLATAVQKPREFQDLASGFGCGGGQNLDLNRSRMNSWAWGEVSDCWIGKRSNGGDDHNHIGVSAAIKMKKMKGRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDSCRVKKRVERLAEDPRMVITTYEGRHAHSPSNELEESQTHSELANFFW* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1562 237 Gene3D WRKY domain 147 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g1562 237 SUPERFAMILY WRKY DNA-binding domain 152 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g1562 237 Pfam WRKY DNA -binding domain 161 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g1562 237 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 77 230 IPR044810 GO:0003700
Psa5g1562 237 SMART WRKY_cls 160 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g1562 237 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 77 230 - -
Psa5g1562 237 ProSiteProfiles WRKY domain profile. 155 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1562 Psa-Chr5 122725835 122728399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1562 122 237 WRKY Transcription Factor Family AT4G39410 74.797 1.28e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa5g1562 WRKY 1.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1562 - - gmx:100127389 330.872