Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1559 ATGAATCCTCCACCGCACTTCATCTTCTCCGCACTACATTTACTTTTCATTTTCCTCACTTCCTCCTCCGCCTCACAACCGGAGCTCCGATCTCTACTAGAATTCAAAAAAGGCATAACTTCAGATCCAACAAATCTAGTTCTTAACTCATGGAGCCCTTATTCCATCACCGACTTCGACAAGTGTCCCCCCAAATGGGAAGGAATCTCCTGCGACGAACTCACCGGAAACGTCACCGGAATTGTACTCGACAACCATAACCTCACCGGAGAGATAAAGTTTCATACTCTCCTTGACCTTAAAATGCTCAGAAATCTCAGTCTCGCCGGGAATCAGTTCACCGGAAGGTTACCCCCTTCTTTAGGTATAATAACCTCTCTCCAGCATTTGGATCTTTCAAGCAACAGATTCTACGGTCCAATTCCTGCACGGATCAACGATCTTTGGGGTCTCAATTACCTCAATTTATCAAACAATGAATTCAAAGGTGGATTTCCCACTGGTCTCAACAATCTTCAGCAACTTAGGGTTCTCGATTTGCACTCTAACGAACTCTGGGCTGACATTGGTGACCTTCTTCCAACTCTTCGCAATCTAGAGTTTCTAGATTTGAGTCAGAATCAGTTCTATGGTGGACTTTCCATTACTCTTGAGAATGTTTCCTCTTTGGCGAATACAGTTCGATTTTTGAACATCAGTCATAATAAATTGAACGGAAACTTCTTCCTAAACGACTCAATTGCACTGTTTCGGAACTTGCAAGCTTTGGATTTGAGTGATAACATGATTAGAGGGGAGCTTCCTTCTTTTGTTTCCTTGCACGGGCTTCGAGTTCTGAGACTTGCTCGGAATCTTTTCTTTGGAGCTGTGCCTGAGGATTTGTTGTTGACTTCAATGTCCTTGGAAGAATTGAATCTTAGTTCCAATGGATTTACTGGCTCAATTGCTGTAATTAACTCTACCACTTTAAATATTTTGGATCTTTCATCGAATAGTTTATCAGGACCATTGCCAACTTCTTTGAGAAGCTGTACAGTCATAGATTTGAGCAGGAATATGTTTTCTGGAGACATTTCTGTAATAGAGAACTGGGAAGCCACTATGGAGGTTATTGATTTGAGCTCAAACAAGCTGTCAGGATCCTTGCCATCTATTATAGAATATTCAAAATTGTCTACCCTTGACTTAAGTTTGAATGAACTTAATGGATCCATTCCGGTTAGTTTAGTTATTTCACCATCACTGACAAGACTCAATCTTTCTGGAAATCAATTTACAGGACCACTTTTGCTTCAAGGTTCAGGGGCTAGTGAATTACTACTCACATCTCCTTTTCTTCCAATAGAATATTTTGATGTATCAAACAACTCTTTAGAAGGCGTCTTGCCTTCTGATATAGGTAGGATGGTTAAGCTCAAACTGCTGAATCTGGCAAGGAATGGCTTTTCTGGACAAATTCCAAATGAATTGAGCAAACTTGTTGATTTAGTGTCCCTCGATTTGTCTAACAACAAATTTACTGGCAATCTTCCTGACAAGCTTTCATCTAGCTTGAATGTACTTAATGTGTCCAACAATGATCTATCTGGCCCTGTTCCCGAAACTTTGCGGCGGTTTCCTGCATCATCCTTTTACCCTGGAAATGAAAAGCTAAAGTTACCAAATAATTCTCCTGATTATTCTTCACTGCCAGAAAATATGCCAAATAAACAACATAGTTCGAAGGGTAATATCAGGATAGCAATTATCCTTGCTTCTGTGGGTGCTGCTGTGATGATTGCTTTTGTTTTATTGGCTTATCATCGAACACAAGCAAAAGAATTTCATGGGAGAAGTGAGTTTGGTGGTCAAACTACTGGAGGACTTTCAAGGGCTTCTCTTTTCAAGTTCCATACAAATGCTCTTCCCCCATCATCTTCGGCGAGCTTTTCAAATGATCACTTGTTGATATCCAATTCAAGGTCAATTTCTGGACAGCAGGCAGAGTTTATAACTGAAATTTCTGAGCATGGCTTGTCTCAGGGAGTAGCAACCAGTTCAGCACCGGTAATTCCTAATTTGATGGATAACCCTCCTATGTCATCTGGAAGGAAGTCTTCTCCCAGTTCCCCATTGTCGTCCTCACCGCGTTTTATAGAGGCTTGTGAAAAGCCTGTGATGTTGGACGTTTACTCACCAGATCGACTGGCTGGGGAACTGTTTTTTCTGGATTCTTCACTAGCATTCACTGCAGAGGAGTTATCTCGAGCTCCGGCTGAAGTTCTTGGCAGAAGTAGCCATGGCACTCTGTACAAAGCTACCTTGGACAGTGGTCATATGTTGACTGTAAAATGGTTAAGGGTGGGGTTGGTCAAACATAAAAAGGAGTTTGCTAGAGAAGTTAAAAGGATTGGTTCCATGAGGCATCCAAACATTGTGCCGTTACGAGCATACTATTGGGGGCCTAGGGAACAAGAGAGGCTTCTGCTAGCTGACTATATTCATGGAGACAACTTGGCCCTCCATCTCTACGAGACCACACCCCGGAGATACTCGCCATTGTCATTCAGTCAGAGAATAAAAGTCGCGGTTGATGTTGCAAGATGTCTTTTATACCTTCACGATCGAGGGCTTCCCCACGGAAATCTAAAGCCAACAAATATTCTGTTAGCAGGCCCTGATTACGGTGCCTGTCTTACTGACTACGGTCTGCACCGCCTCATGACACCGGCTGGAGTTGCAGAGCAGATACTAAATCTAGGAGCACTCGGATACCGTGCTCCAGAACTTGCTTCTGCATCCAAACCACTTCCATCCTTTAAGGCCGATGTGTATGCACTTGGGGTGATCCTAATGGAATTATTAACGAGAAAAAGTGCAGGTGACATAATATCGGGACAATCAGGTGCCGTTGATCTTACAGATTGGGTTAGGCTGTGCGAGAGAGAAGGAAGGGTAATGGACTGTATAGACAGAGACATTGCAGGTGGTGAAGAATCCTCCAAAGAGATGGACCAACTGCTAGCAACATCTCTCAGGTGTATTCTCCCTGTACATGAAAGGCCTAACATCAGACAAGTTTTTGAAGATCTCTGTTCTATACCATCATCGGCTTGA 3096 0.4276 MNPPPHFIFSALHLLFIFLTSSSASQPELRSLLEFKKGITSDPTNLVLNSWSPYSITDFDKCPPKWEGISCDELTGNVTGIVLDNHNLTGEIKFHTLLDLKMLRNLSLAGNQFTGRLPPSLGIITSLQHLDLSSNRFYGPIPARINDLWGLNYLNLSNNEFKGGFPTGLNNLQQLRVLDLHSNELWADIGDLLPTLRNLEFLDLSQNQFYGGLSITLENVSSLANTVRFLNISHNKLNGNFFLNDSIALFRNLQALDLSDNMIRGELPSFVSLHGLRVLRLARNLFFGAVPEDLLLTSMSLEELNLSSNGFTGSIAVINSTTLNILDLSSNSLSGPLPTSLRSCTVIDLSRNMFSGDISVIENWEATMEVIDLSSNKLSGSLPSIIEYSKLSTLDLSLNELNGSIPVSLVISPSLTRLNLSGNQFTGPLLLQGSGASELLLTSPFLPIEYFDVSNNSLEGVLPSDIGRMVKLKLLNLARNGFSGQIPNELSKLVDLVSLDLSNNKFTGNLPDKLSSSLNVLNVSNNDLSGPVPETLRRFPASSFYPGNEKLKLPNNSPDYSSLPENMPNKQHSSKGNIRIAIILASVGAAVMIAFVLLAYHRTQAKEFHGRSEFGGQTTGGLSRASLFKFHTNALPPSSSASFSNDHLLISNSRSISGQQAEFITEISEHGLSQGVATSSAPVIPNLMDNPPMSSGRKSSPSSPLSSSPRFIEACEKPVMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNIVPLRAYYWGPREQERLLLADYIHGDNLALHLYETTPRRYSPLSFSQRIKVAVDVARCLLYLHDRGLPHGNLKPTNILLAGPDYGACLTDYGLHRLMTPAGVAEQILNLGALGYRAPELASASKPLPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVMDCIDRDIAGGEESSKEMDQLLATSLRCILPVHERPNIRQVFEDLCSIPSSA* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1559 1031 SUPERFAMILY L domain-like 447 542 - -
Psa5g1559 1031 Pfam Leucine rich repeat N-terminal domain 27 72 IPR013210 -
Psa5g1559 1031 Pfam Protein kinase domain 753 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1559 1031 Gene3D Ribonuclease Inhibitor 28 189 IPR032675 -
Psa5g1559 1031 Gene3D Phosphorylase Kinase; domain 1 730 826 - -
Psa5g1559 1031 PANTHER OS07G0626500 PROTEIN 12 1026 - -
Psa5g1559 1031 Gene3D Ribonuclease Inhibitor 190 296 IPR032675 -
Psa5g1559 1031 SUPERFAMILY Protein kinase-like (PK-like) 752 1024 IPR011009 -
Psa5g1559 1031 Gene3D Transferase(Phosphotransferase) domain 1 828 1031 - -
Psa5g1559 1031 Gene3D Ribonuclease Inhibitor 297 434 IPR032675 -
Psa5g1559 1031 ProSiteProfiles Protein kinase domain profile. 749 1031 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1559 1031 PANTHER OS07G0626500 PROTEIN 12 1026 - -
Psa5g1559 1031 Pfam Leucine Rich repeat 298 315 IPR001611 GO:0005515
Psa5g1559 1031 Pfam Leucine Rich repeat 412 427 IPR001611 GO:0005515
Psa5g1559 1031 Gene3D Ribonuclease Inhibitor 448 551 IPR032675 -
Psa5g1559 1031 ProSiteProfiles Leucine-rich repeat profile. 252 274 IPR001611 GO:0005515
Psa5g1559 1031 SUPERFAMILY RNI-like 81 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1559 Psa-Chr5 122067438 122072446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1559 23 1028 Receptor kinase-like Gene Family AT5G65700 27.128 3.97e-65 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa5g1559 Pkinase 5.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1559 - - gmx:100802768 1593.94