Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1558 ATGTTACTCACGGAGGTAGCAGAATGTTCTAGAGCAGATGCAGCTAATAGTCTTGTTTATGAAGCAAATGTGAGACTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCTGCATTACAACAACAGGTTCAATCTTTACAAAGTGAACTCAATGTATTAAGAGGTGAAATACTTAAATACAAATTAAGAGAAGCAGCTAACATCAACATGAATAACATGAATAATATGAATATGAACATGAATATGAATATGCTACCACCTTCTTCTCATCATGTTCCAATGCTCCCTTCTAATTCTGCTGCTGTTTCAATTGCTGCTCCACCGCCGCCGCCTCCTCCTCCTCCTCCGCCTCTACCTCCTACAACCTCTAATTCCTCTTCTTCCATATACTACCAGCAGAGGGATCCCAACAGCTATACCAGAATTTCAAGTGATGATAATATTTCATATTTTGGTTAA 462 0.3896 MLLTEVAECSRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQSELNVLRGEILKYKLREAANINMNNMNNMNMNMNMNMLPPSSHHVPMLPSNSAAVSIAAPPPPPPPPPPPLPPTTSNSSSSIYYQQRDPNSYTRISSDDNISYFG* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1558 153 Pfam Mitochondrial fission regulator 42 137 IPR007972 -
Psa5g1558 153 Pfam Lateral organ boundaries (LOB) domain 2 54 IPR004883 -
Psa5g1558 153 MobiDBLite consensus disorder prediction 90 153 - -
Psa5g1558 153 PANTHER LOB DOMAIN PROTEIN 2 152 - -
Psa5g1558 153 MobiDBLite consensus disorder prediction 104 123 - -
Psa5g1558 153 ProSiteProfiles LOB domain profile. 1 58 IPR004883 -
Psa5g1558 153 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 152 - -
Psa5g1558 153 Coils Coil 37 64 - -
Psa5g1558 153 MobiDBLite consensus disorder prediction 124 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1558 Psa-Chr5 122047979 122050015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1558 2 75 AS2 family AT2G30340 65.789 2.70e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa5g1558 Mito_fiss_reg 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1558 - - gmx:100790799 147.132