Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1550 ATGGCAAGCATGATGGTTGATGCCACCAAGAAAATGATCAAAAGATGGAATTCCCAAATTAACTCCGGCCACCTTGAAATCGACATTGAAAGAGAGATTGTCGCAACTGCCGGAGACATTATAGCAAAAGCAAGCTTTGGAATGGGAGATGAAAAAGGAAAATTAGTCTTTGAACAGCTAAGAACTTTGCAAATGACCCTTTTTAAGACCAAAGGATATGTGGGGGTTCCATTTGAAAAATTCTTTAATTTCAAGAAAACATTTGAAGCCAAGAATATTGGTAAAAATGTTGACAAGCTCATGTTATCCATCATAGAAGATAGGATGAATTCATATGATAAGAAACAACATGAACAAGATTTGTTGGGTCATTTGTTGAAAGAAAATCATGAGATTGATGGAAAATTGAACAAGGCATTAACAAAAAAGGAATTGGTTGATGAGTGCAAGACATTTTTCTTTGGTGGCTATGAGACAACATCACTTTCAATCACATGGACTTTGCTACTTCTAGCTTTGCATCAAGATTGGCAAAACCAATTGAGAGATGAAATTAAACAAGTGATTGGTAATATTGAAAAACTTGACATCAACTTACTTGCGGATTTAAAGAAGATGAAATGCGTGATGAATGAAGCACTTAGACTTTACCCACCGTCTCCAAATGTGCAAAGACAAACTATGGAGGATATTCAATTAGACAATTTAAAGGTGCCTAGAGGGACCAATATTTGGATTGATGTTGTAGCAATGCACCATGATGTTACAATATGGGGGAATGATGCCAACAAGTTCAAACCGGAGAGGTTTATGAATGATGCAAATGGAGAATCCAACCACAAAATGGGGTATTTGCCTTTTGGCTTTGGAGGAAGATCATGTGTTGGTAGGAACTTGACTTTCATGGAGTATAAGATAGTGTTAACACTACTTCTTTCTAAGTTTAAGTTTAAAGTCTCCCCTAGTTATCACCATTCTCCTACTATCATGTTGTCTCTTAGACCCAAACATGGACTTCCTCTCATAGTTCAACCATTGTAG 1041 0.366 MASMMVDATKKMIKRWNSQINSGHLEIDIEREIVATAGDIIAKASFGMGDEKGKLVFEQLRTLQMTLFKTKGYVGVPFEKFFNFKKTFEAKNIGKNVDKLMLSIIEDRMNSYDKKQHEQDLLGHLLKENHEIDGKLNKALTKKELVDECKTFFFGGYETTSLSITWTLLLLALHQDWQNQLRDEIKQVIGNIEKLDINLLADLKKMKCVMNEALRLYPPSPNVQRQTMEDIQLDNLKVPRGTNIWIDVVAMHHDVTIWGNDANKFKPERFMNDANGESNHKMGYLPFGFGGRSCVGRNLTFMEYKIVLTLLLSKFKFKVSPSYHHSPTIMLSLRPKHGLPLIVQPL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1550 346 PRINTS E-class P450 group I signature 144 161 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa5g1550 346 PRINTS E-class P450 group I signature 164 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa5g1550 346 PRINTS E-class P450 group I signature 284 294 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa5g1550 346 PRINTS E-class P450 group I signature 294 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa5g1550 346 PANTHER CYTOCHROME P450 FAMILY 72 PROTEIN 1 341 - -
Psa5g1550 346 SUPERFAMILY Cytochrome P450 1 345 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa5g1550 346 PRINTS P450 superfamily signature 155 172 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa5g1550 346 PRINTS P450 superfamily signature 208 219 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa5g1550 346 PRINTS P450 superfamily signature 285 294 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa5g1550 346 PRINTS P450 superfamily signature 294 305 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa5g1550 346 Coils Coil 178 198 - -
Psa5g1550 346 Pfam Cytochrome P450 3 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa5g1550 346 Gene3D Cytochrome P450 1 346 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa5g1550 346 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 287 296 IPR017972 GO:0005506|GO:0016705
Psa5g1550 346 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1550 Psa-Chr5 121856115 121857818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1550 1 346 Cytochrome P450 AT5G52400 55.908 1.52e-140 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1550 - - mtr:MTR_0025s0110 548.51