Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa5g1549 | ATGGCACCAAACCAGAAAACCGCAAGAAAACCTAGAGTCAGCCGAAACCCCGAACTGATCAGGGGTATCGGAAAATACTCCAGGTCCACGATGTACCACAAGAGGGGACTCTGGGCCATCAAGGCCAAGCACGGCGGTGCTTTCCCCCGTCACGATCCAACCCCAAAGCCTGAAGCTCCAGTTGAGAAGGCCCCCAAATTCTACCCGGCTGATGACGTCAAGAAGCCACTCCGCAATAAGCACAAACCAAAACCCACCAAGCTCAGGGCTAGCATTACTCCAGGAACAGTTTTGATTCTTCTTGCCGGAAGGTTCAAGGGGAAGAGAGTAGTGTTTCTCAAGCAGCTTCCTTCTGGACTTCTCCTAGTTACTGGCCCATTCAAGATTAACGGAGTCCCCTTGAGGCGAGTGAACCAGTCTTATGTCATTGGCACATCAACCAAAGTAGATGTTTCTTCTGTTAACGTTGAAAAGTTTGATGACAAATACTTCTCAAAGGAATCCCAGAAGAAGACAAAGAAGGGAGAGGGTGAATTCTTTGAGGCAGATAAGGAGGATAAAAAAGTGCTCCCCCAGTCAAAGAAGGACGATCAAAAGACTCTTGACGCTGGTTTGCTAAAAGCCATCGAAACTGTTCCCGACTTGAAAACTTACCTTGGTGCTAGGTTTTCCTTGAAGGCTGGAGTGAAGCCTCATGAGTTAGTATTCTAG | 711 | 0.4796 | MAPNQKTARKPRVSRNPELIRGIGKYSRSTMYHKRGLWAIKAKHGGAFPRHDPTPKPEAPVEKAPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSSVNVEKFDDKYFSKESQKKTKKGEGEFFEADKEDKKVLPQSKKDDQKTLDAGLLKAIETVPDLKTYLGARFSLKAGVKPHELVF* | 237 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa5g1549 | 236 | Gene3D | - | 90 | 174 | IPR014722 | - | |
Psa5g1549 | 236 | PANTHER | 60S RIBOSOMAL PROTEIN L6 | 1 | 236 | - | - | |
Psa5g1549 | 236 | Pfam | Ribosomal protein L6e | 129 | 236 | IPR000915 | GO:0003735|GO:0005840|GO:0006412 | |
Psa5g1549 | 236 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Psa5g1549 | 236 | Pfam | Ribosomal protein L6, N-terminal domain | 6 | 63 | IPR005568 | GO:0003735|GO:0005840|GO:0006412 | |
Psa5g1549 | 236 | SUPERFAMILY | Translation proteins SH3-like domain | 90 | 179 | IPR008991 | - | |
Psa5g1549 | 236 | CDD | KOW_RPL6 | 84 | 236 | IPR041997 | - | |
Psa5g1549 | 236 | PANTHER | 60S RIBOSOMAL PROTEIN L6 | 1 | 236 | IPR000915 | GO:0003735|GO:0005840|GO:0006412 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa5g1549 | Psa-Chr5 | 121678255 | 121680696 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa5g1549 | 9 | 236 | Cytoplasmic Ribosomal Protein Gene Family | AT1G74050 | 79.386 | 1.19e-118 | 336 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa5g1549 | K02934 | - | gmx:100785356 | 395.586 |