Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1549 ATGGCACCAAACCAGAAAACCGCAAGAAAACCTAGAGTCAGCCGAAACCCCGAACTGATCAGGGGTATCGGAAAATACTCCAGGTCCACGATGTACCACAAGAGGGGACTCTGGGCCATCAAGGCCAAGCACGGCGGTGCTTTCCCCCGTCACGATCCAACCCCAAAGCCTGAAGCTCCAGTTGAGAAGGCCCCCAAATTCTACCCGGCTGATGACGTCAAGAAGCCACTCCGCAATAAGCACAAACCAAAACCCACCAAGCTCAGGGCTAGCATTACTCCAGGAACAGTTTTGATTCTTCTTGCCGGAAGGTTCAAGGGGAAGAGAGTAGTGTTTCTCAAGCAGCTTCCTTCTGGACTTCTCCTAGTTACTGGCCCATTCAAGATTAACGGAGTCCCCTTGAGGCGAGTGAACCAGTCTTATGTCATTGGCACATCAACCAAAGTAGATGTTTCTTCTGTTAACGTTGAAAAGTTTGATGACAAATACTTCTCAAAGGAATCCCAGAAGAAGACAAAGAAGGGAGAGGGTGAATTCTTTGAGGCAGATAAGGAGGATAAAAAAGTGCTCCCCCAGTCAAAGAAGGACGATCAAAAGACTCTTGACGCTGGTTTGCTAAAAGCCATCGAAACTGTTCCCGACTTGAAAACTTACCTTGGTGCTAGGTTTTCCTTGAAGGCTGGAGTGAAGCCTCATGAGTTAGTATTCTAG 711 0.4796 MAPNQKTARKPRVSRNPELIRGIGKYSRSTMYHKRGLWAIKAKHGGAFPRHDPTPKPEAPVEKAPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSSVNVEKFDDKYFSKESQKKTKKGEGEFFEADKEDKKVLPQSKKDDQKTLDAGLLKAIETVPDLKTYLGARFSLKAGVKPHELVF* 237
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1549 236 Gene3D - 90 174 IPR014722 -
Psa5g1549 236 PANTHER 60S RIBOSOMAL PROTEIN L6 1 236 - -
Psa5g1549 236 Pfam Ribosomal protein L6e 129 236 IPR000915 GO:0003735|GO:0005840|GO:0006412
Psa5g1549 236 MobiDBLite consensus disorder prediction 1 20 - -
Psa5g1549 236 Pfam Ribosomal protein L6, N-terminal domain 6 63 IPR005568 GO:0003735|GO:0005840|GO:0006412
Psa5g1549 236 SUPERFAMILY Translation proteins SH3-like domain 90 179 IPR008991 -
Psa5g1549 236 CDD KOW_RPL6 84 236 IPR041997 -
Psa5g1549 236 PANTHER 60S RIBOSOMAL PROTEIN L6 1 236 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa5g1549 Psa-Chr5 121678255 121680696 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1549 9 236 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 79.386 1.19e-118 336
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1549 K02934 - gmx:100785356 395.586