Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1524 ATGCAAAACATAGCTGGAGGAATGATGTCCTATGACATGGGAGGTCTTCCACTCCGTGATGTACCACCTATGCCAATTCATGCTTTGGCTACGGCTCTGGCGAATGCTCCCCCCGAACAGCAAAGGACGATGCTTGGAGAGGCTTTGTATCCTCTGTTAGACCTATTGGAACATGAGTCAGCAGCTAAGGTTACCGGCATGCTTTTGGAGATGGACCAGCCTGAAGTATTGCATTTGATAGAATCACCTGATGCTCTCAAGGCTAAAGTTGTTGAAGCCATGGATGTCCTGAGAAATGCTTCTCAACAAGGCAATAGTCCAGCGGATCAACTAGCTTCACTTTCCCTCAACGACAATCTTGTATCTTAG 369 0.4715 MQNIAGGMMSYDMGGLPLRDVPPMPIHALATALANAPPEQQRTMLGEALYPLLDLLEHESAAKVTGMLLEMDQPEVLHLIESPDALKAKVVEAMDVLRNASQQGNSPADQLASLSLNDNLVS* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1524 122 SUPERFAMILY PABC (PABP) domain 21 115 IPR036053 GO:0003723
Psa5g1524 122 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 25 102 IPR002004 GO:0003723
Psa5g1524 122 Gene3D - 22 104 - -
Psa5g1524 122 SMART poly_2 37 100 IPR002004 GO:0003723
Psa5g1524 122 Pfam Poly-adenylate binding protein, unique domain 33 97 IPR002004 GO:0003723
Psa5g1524 122 PANTHER POLYADENYLATE-BINDING PROTEIN 19 107 - -
Psa5g1524 122 PANTHER RNA BINDING PROTEIN 19 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1524 Psa-Chr5 116603459 116603827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1524 11 121 Eukaryotic Initiation Factors Gene Family AT1G49760 72.034 4.44e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1524 K13126 - gmx:100784442 201.06