Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1521 ATGATGTCCTATGACATGGGAGGTCTTCCACTCCGTGATGTACCACCTATGCCAATTCATGCTCCCCCCAAACAGCAAAGGACGATGCTTGGAGAGGCTTTGTATCCTCTGTTAGACCTGTTGGAACATGAGTCAGCAGCTAAGGTTACCGGCATGCTTTTGGAGATGGACCAGCCTGAAGTATTGCATTTGATAGAATCACTTGATGCTCTCAAGGCTAAAGTTGTTGAAGCCATGGATGTCCTGAGAAATGTTTCTCAACAAGGCAATAGTTCAGCGGATCAACTAGCTTCACTTTCCCTCAACGACAATCTTGTATCTTAG 324 0.4568 MMSYDMGGLPLRDVPPMPIHAPPKQQRTMLGEALYPLLDLLEHESAAKVTGMLLEMDQPEVLHLIESLDALKAKVVEAMDVLRNVSQQGNSSADQLASLSLNDNLVS* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1521 107 SUPERFAMILY PABC (PABP) domain 20 98 IPR036053 GO:0003723
Psa5g1521 107 Gene3D - 16 89 - -
Psa5g1521 107 PANTHER RNA BINDING PROTEIN 20 93 - -
Psa5g1521 107 SMART poly_2 22 85 IPR002004 GO:0003723
Psa5g1521 107 Pfam Poly-adenylate binding protein, unique domain 20 82 IPR002004 GO:0003723
Psa5g1521 107 Coils Coil 68 88 - -
Psa5g1521 107 PANTHER POLYADENYLATE-BINDING PROTEIN 20 93 - -
Psa5g1521 107 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 10 87 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1521 Psa-Chr5 116587434 116587757 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1521 4 106 Eukaryotic Initiation Factors Gene Family AT1G49760 64.407 8.11e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1521 K13126 - gmx:100811385 164.466