Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1517 ATGGAATTAGCCTCCAAGCTTCACCACCTTGACCTCACCGGAGCATTTATTCTCGATTCACGACGCTTACCACGCACCCTAACCCACACTCATCTCAGCACCAAGCCCAACACCATCAACACAAACACTAATTTAGTTTACCCCAATCGATTCTTTCCCTCCAAAAAACCTAATTACACTTCGCGTTTATCCGCCGTAGCCGCCGTCGACGACACTCCAGTAGCAGAAGACGACATCGAGTCTCTATTTTCCGAACCTTCAGTTAAAGAAAAACGCGGCAACAAGCAATCAAGTAACGGTGCTTCAACCGTTTCATCCGGTGTGAAATTAGAAAACATCAGGAAAACCTATAAGGGTGTTACGGTGTTGAAGGAAGTTAATTGGGAAGTGAAAAAGGGGGAGAAAGTTGGTTTGGTTGGTGTTAACGGTGCGGGGAAGACGACGCAGATGAGGATTATTGCTGGTCTCGAAGAACCGGATTCAGGTAATGTGATAAAGGCTAAACAGAATATGAAAATTGCGTTTTTGAGCCAGGAGTTTGAGGTGTCACAGAGTAGGACTGTGAGGGAGGAGTTTATGAGTGCTTTCAAAGAGGAAATGGAGGTTGCTACTAAGTTGGAGAAAGTGCAGAAGGCGCTTGAGTCTTCTGTTAATGATTTGGACTTGATGGGGAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGACGAGCACAGTCTGTGAATTTGGATATTGTTGATTCAAAGATAAGTAAGTTGATGCCTGAACTTGGTTTTGGTACTGAGGATTCTGATAGGTTGGTTGCTTCTTTTAGTGGTGGATGGCAAATGAGGATGTGTCTAGGCAAGATTTTACTTCAGGAACCAGATTTATTATTGTTGGATGAGCCTACAAATCACCTTGATCTTGATACCATCGAGTGGCTTGAGGAATATCTTAACATGCAGGATGTGCCAATGGTTATCATTTCCCACGACAGGGCTTTTCTCGATCAACTATGTACAAAAATTGTGGAAACTGAAATCGGTGTATCCAGGACATTTGAGGGAAATTATTCTCAGTATATACTTTCAAAGGCAACTTGGATTGAAACACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAGACAAGAGAGTTGATAAGTAGGTTAGGTGCTGGAGCAAGTTCTGGCCGTGCTTCTTCTGCTGAGAAGAAATTGGAAAAACTTCTGGGAGAGGAACTAGTACAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGTTCGTGGAAGCAGTGGAAGATCTGTTGTAACAGTTAGGAACTTGGATTTTGGTTTTGAGGATAAAATACTTTTCAACAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCTATTCTTGGTCCAAATGGATGTGGCAAGAGTACTTTACTAAAATTGATTATGGGTTTAGAGAAGCCAATCAGCGGTGAAGTTATACTTGGGGAGCATAATGTATTACCCAACTATTTTGAGCAAAATCAGGCTGAAGCACTTGATCTGGAAAAGACAGTGCTTGAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGAGTGATGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGACCGTAAAGTTTCGCTATTGAGTGGTGGCGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTCCTTGTTTTGGATGAACCAACCAATCATTTGGATATACCTTCTAAAGAAATGCTCGAGGAGGCAATAAACGAGTACGAGGGAACTATTATCACTGTATCTCATGATCGGTATTTTATTAAGCAGATAGTTAATAGAGTGATTGAAGTTAAAGATGGCAATTTACAGGATTATGCTGGAGATTACAGTTATTATTTGGAGAAGAATGTTGATGCTAGGGAAAGAGAGCTTGAGCGCCAGGCTGAGCTTGAGGACAAAGCTCCTAAATTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAAGCAAGGAAGAAGCAAAAGATGCAGGCCTTTCAGGCAGCAAAACAGAAGTCTAAAGGTGCAAAAAATTCAAAGAGATGGAATTGA 2109 0.4168 MELASKLHHLDLTGAFILDSRRLPRTLTHTHLSTKPNTINTNTNLVYPNRFFPSKKPNYTSRLSAVAAVDDTPVAEDDIESLFSEPSVKEKRGNKQSSNGASTVSSGVKLENIRKTYKGVTVLKEVNWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVIKAKQNMKIAFLSQEFEVSQSRTVREEFMSAFKEEMEVATKLEKVQKALESSVNDLDLMGRLLDEFDLLQRRAQSVNLDIVDSKISKLMPELGFGTEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNMQDVPMVIISHDRAFLDQLCTKIVETEIGVSRTFEGNYSQYILSKATWIETQYAAWEKQQKEIEQTRELISRLGAGASSGRASSAEKKLEKLLGEELVQKPFERKQMKIRFPVRGSSGRSVVTVRNLDFGFEDKILFNKANLTIERGEKIAILGPNGCGKSTLLKLIMGLEKPISGEVILGEHNVLPNYFEQNQAEALDLEKTVLETVEEAAEDWRSDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYEGTIITVSHDRYFIKQIVNRVIEVKDGNLQDYAGDYSYYLEKNVDARERELERQAELEDKAPKLKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGAKNSKRWN* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1517 702 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 108 366 IPR003439 GO:0005524
Psa5g1517 702 CDD ABCF_EF-3 435 626 - -
Psa5g1517 702 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524
Psa5g1517 702 Gene3D - 105 389 IPR027417 -
Psa5g1517 702 SMART AAA_5 459 627 IPR003593 -
Psa5g1517 702 SMART AAA_5 132 347 IPR003593 -
Psa5g1517 702 CDD ABCF_EF-3 108 338 - -
Psa5g1517 702 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 53 692 - -
Psa5g1517 702 MobiDBLite consensus disorder prediction 82 105 - -
Psa5g1517 702 Pfam ABC transporter 451 582 IPR003439 GO:0005524
Psa5g1517 702 Pfam ABC transporter 123 298 IPR003439 GO:0005524
Psa5g1517 702 ProSitePatterns ABC transporters family signature. 270 284 IPR017871 GO:0005524
Psa5g1517 702 Gene3D - 398 665 IPR027417 -
Psa5g1517 702 MobiDBLite consensus disorder prediction 652 682 - -
Psa5g1517 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 641 IPR027417 -
Psa5g1517 702 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 53 692 - -
Psa5g1517 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 339 IPR027417 -
Psa5g1517 702 Pfam ABC transporter 337 424 IPR032781 -
Psa5g1517 702 MobiDBLite consensus disorder prediction 652 702 - -
Psa5g1517 702 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 435 650 IPR003439 GO:0005524
Psa5g1517 702 Coils Coil 646 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1517 Psa-Chr5 116169034 116178528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1517 432 652 Calmodulin-binding Proteins AT2G36910 26.316 3.82e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1517 - - gmx:100796907 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1517 5 116169034 116178528 Psa5g1517 5 116169034 116178528 ECH