Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1506 ATGGATTTGGACGATTTCCGATCCATATTAGATACGGCGGGCGTTGACGTGTGGATGTTTATCGACACCGCAATCACCGTCGCTTCTCTGGACAACGCCGGCGAGTTAAAGCAACGGAGAGACGGAATCGTAATATTAGATACGGCGGGCGTTGACGTGTGGATGTTTATCGACACCGCAATCACCGTCGCTTCTCTGGACAACGCCGGCGAGTTAAAGCAACGGAGAGACGGAATCGTGGAGCGTCTTTACGCCGCCACCACTGCTCCTCCGCTTTGTCAGAATTGTGAAGGCGGAGGAAGCCTTTTGACTGACGGTAACCAAATCAGGAAACAGAGTAACCCTAGTTTAAGCCCGGAACGAAATCAGCGCCGTGGCGGCTCGTCTCCTCCGACGCCGCAGTCGCAAGGAAACGACGATGATGAAGATGAGGAGATAGATCCTTACGGTGGTTTGTTCGAGGATGAACAGAAGAAGATTCTAGAAATTAAAGAGTTGCTTGAAGATCCTACACTGCCTGATGATTCTTTGTTGGAGTTACTGCAAAATCTGGTGGATATTGATATTACATTCCAAGAGTTGAAGGAGACTGACATTGGGAGGAATGTGAATCAGTTAAGGAAACATCCATCTAGCGAGGTTCGCCGATTGGTGAAGCTGCTTGTCAAGAAGTGGAAAGAAATTGTGGATGAATGGGTGAAGTTGAATCCACAGGGAGGAAAAAACACTGTCATGGCTGATGGAGACTCTCCTTTGCAGAAAACAACCCCAAATGGGCATCATCATCAGATTCCTGATTTTGCATACTCACCAAATCCACAGAATGGAAGCTCTGGTTCTGACCGTAACCCCTCTGAACTAGAACCAAAACCTAAACAAAAACCAATTCTTCCTCGCAAAGAACCACCTCCAAAACTAAGGCCATCACCCCCAGTTACCGCTCCCGCCACTCAAAATGTATGGTTTTGA 969 0.4788 MDLDDFRSILDTAGVDVWMFIDTAITVASLDNAGELKQRRDGIVILDTAGVDVWMFIDTAITVASLDNAGELKQRRDGIVERLYAATTAPPLCQNCEGGGSLLTDGNQIRKQSNPSLSPERNQRRGGSSPPTPQSQGNDDDEDEEIDPYGGLFEDEQKKILEIKELLEDPTLPDDSLLELLQNLVDIDITFQELKETDIGRNVNQLRKHPSSEVRRLVKLLVKKWKEIVDEWVKLNPQGGKNTVMADGDSPLQKTTPNGHHHQIPDFAYSPNPQNGSSGSDRNPSELEPKPKQKPILPRKEPPPKLRPSPPVTAPATQNVWF* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1506 322 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 153 241 IPR035441 -
Psa5g1506 322 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 158 242 IPR035441 -
Psa5g1506 322 MobiDBLite consensus disorder prediction 111 136 - -
Psa5g1506 322 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 45 314 IPR044790 -
Psa5g1506 322 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 44 IPR044790 -
Psa5g1506 322 MobiDBLite consensus disorder prediction 285 301 - -
Psa5g1506 322 CDD TFIIS_I 157 230 - -
Psa5g1506 322 MobiDBLite consensus disorder prediction 268 322 - -
Psa5g1506 322 SMART TFS2_5 160 231 IPR003617 GO:0005634
Psa5g1506 322 Pfam TFIIS helical bundle-like domain 180 229 IPR017923 -
Psa5g1506 322 ProSiteProfiles TFIIS N-terminal domain profile. 155 232 IPR017923 -
Psa5g1506 322 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 44 - -
Psa5g1506 322 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 45 314 - -
Psa5g1506 322 MobiDBLite consensus disorder prediction 268 284 - -
Psa5g1506 322 MobiDBLite consensus disorder prediction 111 143 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Psa5g1506 Med26 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1506 - - gmx:100790582 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1506 5 115721597 115724268 Psa5g1506 5 115721597 115724268 ECH