Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1499 ATGGATTTCGACGAGTACGATTATCTGGAGAAGACAGTGGAGGAGCTAGAAGACAAAGATTCTTCTAAGAAGGGGAGGGAGAGTATCGACAGGACCGAAAGGAGCTACAGAAAGCGCGATGAGATCGAAGATGGCGCTGAATTGAAGAGGAGCAAGAGGTCCAGTGGCGACGACGATGAACATGTCTCCAGGAAGGATAGAGATCGTGATGATGACCGCGACAAGGAGCGTCGTAGGAGTGGTAGGGATAGGGACAGAGACAGAGACGGTGAGAGGAGTAGCAGAGACCGAGGCCGAGATAGGGAGAGAGATGGGGATAGGGAGAAAGATAGGAGAGACAAGGACAGAGAAAGAGAAAGGAGAGAGAGGGAGAAGGAGAAGGAGAAGGAGAAGGAAAAGGAGAGAGAAAGGTCCCGGAGGAGCAAGAGTCGTTCGGAGCGAGAAAGGGAAATAGAGCGGGAGGAGAGAGAGAGGTCTCGGAGAAGCGTAAGTCGGTCTGAACGAGACAGAGAGAAGGAACGGGAGGAGAGAGACAGATCCAGGAGGAGCAGAAGTCGTTCTGAGCGTGATAGTGTTAGAGAACGGGACTTCGACATGAGAGATAGCCGGAGACTTAGGGAGAAGAAGGAAGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAAAGAGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCGGTGCCAATGGCAATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTAATACTACAACTGGAGCTGCTGGTGTGGTCGGACCATATGGAGCCGTGGACAGAAAACTGTATGTAGGGAATCTTCATTTCAATATGACTGAGAGCCAGTTGAGAGAGATTTTTGAGCCATTTGGTACTGTGGAGGTTGTGCAACTGCCTCTTGACCTGGAGACGGGACATTGCAAGGGTTTTGGATTTATTCAATTTGCCCACCTAGAGCATGCAAAGGCTGCCCAGAGTTTAAATGGAAAGTTGGAAATTGCTGGCAGAACTATCAAGGTTTCATCTGTAGCAGACCATGTTGGAGGCCAAGATACAACAGCAAAATCTGCAGATTTTGACGATGATGAAGGCGGATTGGCTTTAAATGCTCAATCAAGAGCATTGCTTATGCAGAAGTTGGATCGCTCTGGAATTGCTGCAAGCATTGGCTTACCCATGAATGGGTCAGTTCCTGCCCAGCAGGCTATTAGCTTGCCTATTGGTAATCCTGGATTAATACCAGCACTAGCTCTACCAACTCAATTTATGCCTACCCAAGTGGCCGAACCTGTCGGAATCCCCAGCAACTGTTTGCTGTTGAAGAATATGTTTGATCCAACCACTGAGACAGAGCCAGATTTTGATCTAGACATCAAAGAAGATGTAGAGGAAGAGTGTTCTAAATATGGGCGGGTGAAGCATATCTACGTGGACAAAAATAGTGCAGGTTTTGTGTATTTGATGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAGCGTGCAATGCACATGCGGTGGTTTGCCCGCAAAATGATTTCAGCTATATACATGCAACCTCAGGTATATGAAGCCAAGTTTAAAGGGGAAGTGTGA 1767 0.4703 MDFDEYDYLEKTVEELEDKDSSKKGRESIDRTERSYRKRDEIEDGAELKRSKRSSGDDDEHVSRKDRDRDDDRDKERRRSGRDRDRDRDGERSSRDRGRDRERDGDREKDRRDKDRERERREREKEKEKEKEKERERSRRSKSRSEREREIEREERERSRRSVSRSERDREKEREERDRSRRSRSRSERDSVRERDFDMRDSRRLREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPMNGSVPAQQAISLPIGNPGLIPALALPTQFMPTQVAEPVGIPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEAKFKGEV* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1499 588 Gene3D - 321 416 IPR012677 -
Psa5g1499 588 TIGRFAM SF-CC1: splicing factor, CC1-like family 110 584 IPR006509 GO:0003723|GO:0005634|GO:0006397
Psa5g1499 588 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 517 568 IPR000504 GO:0003723
Psa5g1499 588 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 397 IPR000504 GO:0003723
Psa5g1499 588 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 292 IPR000504 GO:0003723
Psa5g1499 588 SUPERFAMILY RNA-binding domain, RBD 216 303 IPR035979 GO:0003676
Psa5g1499 588 CDD RRM2_RBM23_RBM39 327 399 - -
Psa5g1499 588 CDD RRM3_RBM39_like 493 575 - -
Psa5g1499 588 CDD RRM1_RBM39_like 224 296 - -
Psa5g1499 588 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 418 512 IPR029123 -
Psa5g1499 588 Gene3D - 152 309 IPR012677 -
Psa5g1499 588 MobiDBLite consensus disorder prediction 15 221 - -
Psa5g1499 588 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 300 IPR000504 GO:0003723
Psa5g1499 588 SUPERFAMILY RNA-binding domain, RBD 325 577 IPR035979 GO:0003676
Psa5g1499 588 SMART rrm1_1 224 296 IPR000504 GO:0003723
Psa5g1499 588 SMART rrm1_1 326 399 IPR000504 GO:0003723
Psa5g1499 588 SMART rrm1_1 495 572 IPR000504 GO:0003723
Psa5g1499 588 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 403 IPR000504 GO:0003723
Psa5g1499 588 Coils Coil 156 183 - -
Psa5g1499 588 Coils Coil 107 148 - -
Psa5g1499 588 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 150 588 - -
Psa5g1499 588 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 174 - -
Psa5g1499 588 PANTHER CC1-LIKE SPLICING FACTOR 150 588 - -
Psa5g1499 588 PANTHER CC1-LIKE SPLICING FACTOR 1 174 - -
Psa5g1499 588 Gene3D - 489 587 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1499 Psa-Chr5 115286050 115293355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1499 305 398 Eukaryotic Initiation Factors Gene Family AT4G34110 35.789 6.32e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1499 K13091 - gmx:100802446 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1499 5 115286050 115293355 Psa5g1499 5 115286050 115293355 ECH